Data update
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7735 changed files with 38060 additions and 199180 deletions
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with Ada.Text_IO; use Ada.Text_IO;
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procedure Simple_FASTA is
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Current: Character;
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begin
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Get(Current);
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if Current /= '>' then
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raise Constraint_Error with "'>' expected";
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end if;
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while not End_Of_File loop -- read name and string
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Put(Get_Line & ": "); -- read name and write directly to output
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Read_String:
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loop
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exit Read_String when End_Of_File; -- end of input
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Get(Current);
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if Current = '>' then -- next name
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New_Line;
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exit Read_String;
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else
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Put(Current & Get_Line);
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-- read part of string and write directly to output
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end if;
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end loop Read_String;
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end loop;
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end Simple_FASTA;
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@ -1,46 +0,0 @@
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with Ada.Text_IO, Ada.Containers.Indefinite_Ordered_Maps; use Ada.Text_IO;
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procedure FASTA is
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package Maps is new Ada.Containers.Indefinite_Ordered_Maps
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(Element_Type => String, Key_Type => String);
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Map: Maps.Map; -- Map holds the full file (as pairs of name and value)
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function Get_Value(Previous: String := "") return String is
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Current: Character;
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begin
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if End_Of_File then
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return Previous; -- file ends
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else
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Get(Current); -- read first character
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if Current = '>' then -- ah, a new name begins
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return Previous; -- the string read so far is the value
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else -- the entire line is part of the value
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return Get_Value(Previous & Current & Get_Line);
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end if;
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end if;
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end Get_Value;
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procedure Print_Pair(Position: Maps.Cursor) is
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begin
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Put_Line(Maps.Key(Position) & ": " & Maps.Element(Position));
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-- Maps.Key(X) is the name and Maps.Element(X) is the value at X
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end Print_Pair;
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Skip_This: String := Get_Value;
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-- consumes the entire file, until the first line starting with '>'.
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-- the string Skip_This should be empty, but we don't verify this
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begin
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while not End_Of_File loop -- read the file into Map
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declare
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Name: String := Get_Line;
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-- reads all characters in the line, except for the first ">"
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Value: String := Get_Value;
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begin
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Map.Insert(Key => Name, New_Item => Value);
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-- adds the pair (Name, Value) to Map
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end;
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end loop;
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Map.Iterate(Process => Print_Pair'Access); -- print Map
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end FASTA;
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