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# syntax: GAWK -f MERGE_AND_AGGREGATE_DATASETS.AWK RC-PATIENTS.CSV RC-VISITS.CSV
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# files may appear in any order
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#
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# sorting:
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# PROCINFO["sorted_in"] is used by GAWK
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# SORTTYPE is used by Thompson Automation's TAWK
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#
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{ # printf("%s %s\n",FILENAME,$0) # print input
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split($0,arr,",")
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if (FNR == 1) {
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file = (arr[2] == "LASTNAME") ? "patients" : "visits"
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next
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}
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patient_id_arr[key] = key = arr[1]
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if (file == "patients") {
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lastname_arr[key] = arr[2]
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}
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else if (file == "visits") {
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if (arr[2] > visit_date_arr[key]) {
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visit_date_arr[key] = arr[2]
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}
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if (arr[3] != "") {
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score_arr[key] += arr[3]
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score_count_arr[key]++
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}
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}
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}
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END {
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print("")
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PROCINFO["sorted_in"] = "@ind_str_asc" ; SORTTYPE = 1
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fmt = "%-10s %-10s %-10s %9s %9s %6s\n"
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printf(fmt,"patient_id","lastname","last_visit","score_sum","score_avg","scores")
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for (i in patient_id_arr) {
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avg = (score_count_arr[i] > 0) ? score_arr[i] / score_count_arr[i] : ""
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printf(fmt,patient_id_arr[i],lastname_arr[i],visit_date_arr[i],score_arr[i],avg,score_count_arr[i]+0)
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}
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exit(0)
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}
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