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Initial data commit

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Ingy döt Net 2023-07-01 11:58:00 -04:00
parent 72d218235f
commit f23f22d71c
199087 changed files with 3378941 additions and 0 deletions
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39
Task/Bioinformatics-base-count/Java/bioinformatics-base-count-1.java Normal file
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void printBaseCount(String string) throws IOException {
BufferedReader reader = new BufferedReader(new StringReader(string));
int index = 0;
String sequence;
int A = 0, C = 0, G = 0, T = 0;
int a, c, g, t;
while ((sequence = reader.readLine()) != null) {
System.out.printf("%d %s ", index++, sequence);
a = c = g = t = 0;
for (char base : sequence.toCharArray()) {
switch (base) {
case 'A' -> {
A++;
a++;
}
case 'C' -> {
C++;
c++;
}
case 'G' -> {
G++;
g++;
}
case 'T' -> {
T++;
t++;
}
}
}
System.out.printf("[A %2d, C %2d, G %2d, T %2d]%n", a, c, g, t);
}
reader.close();
int total = A + C + G + T;
System.out.printf("%nTotal of %d bases%n", total);
System.out.printf("A %3d (%.2f%%)%n", A, ((double) A / total) * 100);
System.out.printf("C %3d (%.2f%%)%n", C, ((double) C / total) * 100);
System.out.printf("G %3d (%.2f%%)%n", G, ((double) G / total) * 100);
System.out.printf("T %3d (%.2f%%)%n", T, ((double) T / total) * 100);
}