Initial data commit

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Ingy döt Net 2023-07-01 11:58:00 -04:00
parent 72d218235f
commit f23f22d71c
199087 changed files with 3378941 additions and 0 deletions

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# create tmp fasta file in /tmp/
tmpfile = "/tmp/tmp"+Random.rand.to_s+".fasta"
File.write(tmpfile, ">Rosetta_Example_1
THERECANBENOSPACE
>Rosetta_Example_2
THERECANBESEVERAL
LINESBUTTHEYALLMUST
BECONCATENATED")
# read tmp fasta file and store to hash
ref = tmpfile
id = seq = ""
fasta = {} of String => String
File.each_line(ref) do |line|
if line.starts_with?(">")
fasta[id] = seq.sub(/\s/, "") if id != ""
id = line.split(/\s/)[0].lstrip(">")
seq = ""
else
seq += line
end
end
fasta[id] = seq.sub(/\s/, "")
# show fasta component
fasta.each { |k,v| puts "#{k}: #{v}"}