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Task/FASTA-format/Jq/fasta-format-1.jq
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11
Task/FASTA-format/Jq/fasta-format-1.jq
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def fasta:
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foreach (inputs, ">") as $line
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# state: [accumulator, print ]
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( [null, null];
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if $line[0:1] == ">" then [($line[1:] + ": "), .[0]]
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else [ (.[0] + $line), false]
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end;
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if .[1] then .[1] else empty end )
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;
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fasta
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3
Task/FASTA-format/Jq/fasta-format-2.jq
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Task/FASTA-format/Jq/fasta-format-2.jq
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$ jq -n -R -r -f FASTA_format.jq < FASTA_format.fasta
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Rosetta_Example_1: THERECANBENOSPACE
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Rosetta_Example_2: THERECANBESEVERALLINESBUTTHEYALLMUSTBECONCATENATED
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