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Initial data commit

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Ingy döt Net 2023-07-01 11:58:00 -04:00
parent 72d218235f
commit f23f22d71c
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16
Task/FASTA-format/REXX/fasta-format-1.rexx Normal file
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/*REXX program reads a (bio-informational) FASTA file and displays the contents. */
parse arg iFID . /*iFID: the input file to be read. */
if iFID=='' then iFID='FASTA.IN' /*Not specified? Then use the default.*/
name= /*the name of an output file (so far). */
$= /*the value of the output file's stuff.*/
do while lines(iFID)\==0 /*process the FASTA file contents. */
x=strip( linein(iFID), 'T') /*read a line (a record) from the file,*/
/*───────── and strip trailing blanks. */
if left(x, 1)=='>' then do
if $\=='' then say name':' $
name=substr(x, 2)
$=
end
else $=$ || x
end /*j*/ /* [↓] show output of last file used. */
if $\=='' then say name':' $ /*stick a fork in it, we're all done. */

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Task/FASTA-format/REXX/fasta-format-2.rexx Normal file
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/*REXX program reads a (bio-informational) FASTA file and displays the contents. */
parse arg iFID . /*iFID: the input file to be read. */
if iFID=='' then iFID='FASTA2.IN' /*Not specified? Then use the default.*/
name= /*the name of an output file (so far). */
$= /*the value of the output file's stuff.*/
do while lines(iFID)\==0 /*process the FASTA file contents. */
x=strip( linein(iFID), 'T') /*read a line (a record) from the file,*/
/*───────── and strip trailing blanks. */
if x=='' then iterate /*If the line is all blank, ignore it. */
if left(x, 1)==';' then do
if name=='' then name=substr(x,2)
say x
iterate
end
if left(x, 1)=='>' then do
if $\=='' then say name':' $
name=substr(x, 2)
$=
end
else $=space($ || translate(x, , '*'), 0)
end /*j*/ /* [↓] show output of last file used. */
if $\=='' then say name':' $ /*stick a fork in it, we're all done. */