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got MD mods from 4.5 branch (alas)
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@ -150,8 +150,26 @@ PSPW:
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MD:
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o AMBER99: Standard parameters only as default force field
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o PME: Shifted grid approach to reduce cost of communication
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o PMF: Optional global scaling PMF force constant
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o Reporting of PMF energies
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o Specification biasing PMF for application of bias correction
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o Separate data files for each window
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o MD: Segment size used in determining pair lists
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o Optional recording average properties
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o Import of trajectories to re-evaluate forces and potential energies
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o Use of lambda-scaling in regular MD run
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o Special anisotropic pressure scaling options for membrane simulations
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o Expanded timing analysis data
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o Optional inclusion energies between fized atoms
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o TI: Separately reported mass-contributions to free energy differences
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o ...
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QM/MM:
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o Optional ESP fitting during QM/MM simulations
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o Charge of QM region specified in input
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o QM region with multiple basis set levels
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o Link atom approach using
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Integrals:
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o Performance improvements in Texas integrals (especially for 2nd
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