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      - 'NWChem Manual': Home.md
      - 'How to get NWChem':
          - Download.md
          - Compiling-NWChem.md
      - 'Introduction ':
          - Getting-Started.md
          - NWChem-Architecture.md
      - Capabilities.md
      - Top-level.md
      - Geometry.md
      - Basis.md
      - ECP.md
      - Relativistic-All-electron-Approximations.md
      - Quantum-Mechanical-Methods:
          - Hartree-Fock-Theory-for-Molecules.md
          - Density-Functional-Theory-for-Molecules.md
          - Excited-State-Calculations.md
          - RT-TDDFT.md
          - 'Plane-Wave Density Functional Theory': Plane-Wave-Density-Functional-Theory.md
          - TCE.md
          - MP2.md
          - CCSD.md
          - Multiconfiguration_SCF.md
          - 'Molecular GW': GW.md
      - Quantum Molecular Dynamics:
          - Plane-Wave-Density-Functional-Theory.md
          - Gaussian-Basis-AIMD.md
      - Hybrid Approaches:
          - Solvation-Models.md
          - VEM-Model.md
          - ONIOM.md
          - QMMM:
              - qmmm_introduction.md
              - QMMM table of contents: QMMM.md
              - QMMM Restart and Topology Files:
                  - Overview: QMMM_Restart_and_Topology_Files.md
                  - QMMM_Preparation_Prerequisites.md
                  - Qmmm_preparation_basic.md
                  - Qmmm_preparation_solvation.md
                  - Qmmm_preparation_constraints.md
              - QMMM Input File:
                  - Overview: QMMM_Input_File.md
                  - QMMM_QM_Parameters.md
                  - QMMM_MM_Parameters.md
                  - QMMM_QMMM_Parameters.md
              - QMMMM Single Point Calculations:
                  - QMMM Ground State Energy and Gradient: qmmm_sp_energy.md
                  - QMMM Excited State Energy: QMMM_Excited_States.md
                  - QMMM Properties: qmmm_sp_property.md
                  - QMMM ESP Charge Analysis: QMMM_ESP.md
              - QMMM Potential Energy Surface Analysis:
                  - QMMM Optimization: Qmmm_optimization.md
                  - QMMM Transition States: QMMM_Transition_States.md
                  - QMMM Hessians and Frequency: Qmmm_freq.md
                  - QMMM Reaction Pathway Calculations with NEB: Qmmm_NEB_Calculations.md
              - QMMM_Dynamics.md
              - QMMM_Free_Energy.md
              - QMMM_Appendix.md
          - Bq.md
          - 1D-RISM.md
      - Potential Energy Surface Analysis:
          - Geometry-Optimization.md
          - Hessians-and-Vibrational-Frequencies.md
          - Constraints.md
          - Nudged-Elastic-Band-and-Zero-Temperature-String-Methods.md
      - Electronic Structure Analysis:
          - Properties.md
          - ESP.md
          - DPLOT.md 
      - Other-Capabilities:
          - Electron-Transfer.md
          - Python.md
          - Quantum.md
          - VSCF.md
          - CCCA_method.md
          - Interface.md
      - Molecular Mechanics:
          - Prepare.md
          - MD.md
          - Analysis.md
          - Format_of_MD_Files.md
      - Python.md
      - NWChem Examples:
          - Sample.md
          - Geometry-examples.md
      - Benchmarks.md
      - Known-Bugs.md
      - 'FAQ': FAQ.md
      - 'NWChem Tutorials': Tutorials.md
      - Forum.md
      - 'Archived Forum': Archived-Forum.md
      - 'EMSL Arrows': EMSL_Arrows.md
      - Supplementary Information:
          - Global Arrays: "https://hpc.pnl.gov/globalarrays/"
          - ARMCI.md
      - Interfaces-with-External-Software.md
      - Software-supporting-NWChem.md
      - Containers: Containers.md
      - Documentation in PDF format: "https://nwchemgit.github.io/nwchemusermanual.pdf"
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