precommit: Update Python packages and re-format

tools/precommit/format_fortran.py

@@ -18,7 +18,6 @@ from prettify_cp2k import replacer
 sys.path.insert(0, path.join(path.dirname(path.abspath(__file__)), "fprettify"))
 from fprettify import reformat_ffile, fparse_utils, log_exception
 
-
 TO_UPCASE_RE = re.compile(
     r"""
 (?P<toUpcase>

tools/precommit/install_requirements.sh

@@ -26,8 +26,10 @@ rm -rf /var/lib/apt/lists/*
 python3 -m venv /opt/venv
 export PATH="/opt/venv/bin:$PATH"
 
+# TODO Add a pylock.toml file (https://peps.python.org/pep-0751/)
 # Install Python packages. Upgrade via:
-#   pip3 install black flask gunicorn mdformat-gfm cmake-format
+#   pip3 install black flask gunicorn cmake-format fortitude-lint \
+#      mdformat mdformat-gfm mdformat_frontmatter mdformat_myst mdformat_tables
 #   pip3 freeze > requirements.txt
 pip3 install --quiet -r requirements.txt
 

tools/precommit/prettify_cp2k/normalizeFortranFile.py

@@ -305,7 +305,7 @@ def parseRoutine(inFile, logger):
     }
     stream = InputStream(inFile)
     while True:
-        (jline, _, lines) = stream.nextFortranLine()
+        jline, _, lines = stream.nextFortranLine()
         if len(lines) == 0:
             break
         if FCT_RE.match(jline) or SUBR_RE.match(jline):
@@ -317,7 +317,7 @@ def parseRoutine(inFile, logger):
                 subF = open(m.group("file"), "r", encoding="utf8")
                 subStream = InputStream(subF)
                 while True:
-                    (subjline, _, sublines) = subStream.nextFortranLine()
+                    subjline, _, sublines = subStream.nextFortranLine()
                     if not sublines:
                         break
                     routine["strippedCore"].append(subjline)
@@ -351,7 +351,7 @@ def parseRoutine(inFile, logger):
             routine["result"] = routine["name"]
 
     while True:
-        (jline, comment_list, lines) = stream.nextFortranLine()
+        jline, comment_list, lines = stream.nextFortranLine()
         comments = "\n".join(_ for _ in comment_list)
         if len(lines) == 0:
             break
@@ -422,7 +422,7 @@ def parseRoutine(inFile, logger):
                 istart = lines
                 interfaceDeclFile = StringIO()
                 while True:
-                    (jline, _, lines) = stream.nextFortranLine()
+                    jline, _, lines = stream.nextFortranLine()
                     if INTERFACE_END_RE.match(jline):
                         iend = lines
                         break
@@ -481,7 +481,7 @@ def parseRoutine(inFile, logger):
                 subF = open(m.group("file"), "r", encoding="utf8")
                 subStream = InputStream(subF)
                 while True:
-                    (subjline, _, sublines) = subStream.nextFortranLine()
+                    subjline, _, sublines = subStream.nextFortranLine()
                     if not sublines:
                         break
                     routine["strippedCore"].append(subjline)
@@ -498,7 +498,7 @@ def parseRoutine(inFile, logger):
                 if logger.isEnabledFor(logging.DEBUG):
                     traceback.print_exc()
 
-        (jline, _, lines) = stream.nextFortranLine()
+        jline, _, lines = stream.nextFortranLine()
     return routine
 
 
@@ -1021,7 +1021,7 @@ def parseUse(inFile):
     commonUses = ""
     stream = InputStream(inFile)
     while True:
-        (jline, comment_list, lines) = stream.nextFortranLine()
+        jline, comment_list, lines = stream.nextFortranLine()
         comments = "\n".join(_ for _ in comment_list if _)
         lineNr = lineNr + len(lines)
         if not lines:

tools/precommit/requirements.txt

@@ -1,31 +1,31 @@
-black==24.3.0
-blinker==1.7.0
-click==8.1.7
+black==26.1.0
+blinker==1.9.0
+click==8.3.1
 cmake-format==0.6.13
 cmakelang==0.6.13
-Flask==3.0.0
+Flask==3.1.3
 fortitude-lint==0.7.5
-gunicorn==23.0.0
-itsdangerous==2.1.2
+gunicorn==25.1.0
+itsdangerous==2.2.0
 Jinja2==3.1.6
-linkify-it-py==2.0.2
-markdown-it-py==2.2.0
-MarkupSafe==2.1.3
-mdformat==0.7.17
-mdformat-gfm==0.3.5
-mdformat_frontmatter==2.0.1
-mdformat_myst==0.1.5
-mdformat_tables==0.4.1
-mdit-py-plugins==0.3.5
+markdown-it-py==3.0.0
+MarkupSafe==3.0.3
+mdformat==0.7.22
+mdformat-gfm==1.0.0
+mdformat_footnote==0.1.3
+mdformat_front_matters==2.0.0
+mdformat_frontmatter==2.0.10
+mdformat_myst==0.3.0
+mdformat_tables==1.0.0
+mdit-py-plugins==0.5.0
 mdurl==0.1.2
-mypy-extensions==1.0.0
-packaging==23.2
-pathspec==0.11.2
-platformdirs==4.0.0
-ruamel.yaml==0.18.5
-ruamel.yaml.clib==0.2.8
-six==1.16.0
-tomli==2.0.1
-typing_extensions==4.8.0
-uc-micro-py==1.0.2
-Werkzeug==3.1.5
+mypy_extensions==1.1.0
+packaging==26.0
+pathspec==1.0.4
+platformdirs==4.9.2
+pytokens==0.4.1
+ruamel.yaml==0.19.1
+six==1.17.0
+toml==0.10.2
+wcwidth==0.6.0
+Werkzeug==3.1.6