diff --git a/src/ewalds_multipole.F b/src/ewalds_multipole.F index 0cc239abb0..09b984b1f7 100644 --- a/src/ewalds_multipole.F +++ b/src/ewalds_multipole.F @@ -387,6 +387,12 @@ CONTAINS ikind = neighbor_kind_pair%ij_kind(1,igrp) jkind = neighbor_kind_pair%ij_kind(2,igrp) Pairs: DO ipair = istart, iend + ! skip pairs that are excluded for electrostatics + IF (ipair <= neighbor_kind_pair%nexclude) THEN + IF (neighbor_kind_pair%exclude_ei(ipair)) THEN + CYCLE + END IF + END IF fac_ij = 1.0_dp atom_a = list(1,ipair) atom_b = list(2,ipair) diff --git a/src/fist_intra_force.F b/src/fist_intra_force.F index 71a4f9c011..cdeb56bcbd 100644 --- a/src/fist_intra_force.F +++ b/src/fist_intra_force.F @@ -16,7 +16,8 @@ MODULE fist_intra_force pbc USE distribution_1d_types, ONLY: distribution_1d_type USE f77_blas - USE input_constants, ONLY: do_ff_harmonic + USE input_constants, ONLY: do_ewald_none,& + do_ff_harmonic USE kinds, ONLY: dp USE mol_force, ONLY: force_bends,& force_bonds,& @@ -32,6 +33,7 @@ MODULE fist_intra_force ub_type USE molecule_types_new, ONLY: get_molecule,& molecule_type + USE pair_potential_coulomb, ONLY: potential_coulomb USE particle_types, ONLY: particle_type USE splines_methods, ONLY: potential_s USE splines_types, ONLY: spline_data_p_type,& @@ -93,8 +95,8 @@ CONTAINS nbends, nbonds, nimptors, nkind, nmol_per_kind, nonefs, nopbends, & nshell, ntorsions, nub REAL(KIND=dp) :: d12, d32, dist, dist1, dist2, energy, fscalar, id12, & - id32, is32, ism, isn, qeff_a, qeff_b, rab2, rab2_max, rinv, rinv2, s32, & - sm, sn, theta + id32, is32, ism, isn, mm_radius, mm_radius_a, mm_radius_b, qeff_a, & + qeff_b, rab2, rab2_max, s32, sm, sn, theta REAL(KIND=dp), DIMENSION(3) :: b12, b32, g1, g2, g3, gt1, & gt2, gt3, gt4, k1, k2, k3, & k4, rij, t12, t32, t34, t41, & @@ -114,8 +116,6 @@ CONTAINS TYPE(torsion_type), POINTER :: torsion_list( : ) TYPE(ub_type), POINTER :: ub_list( : ) -! TODO REMOVE THIS - CALL timeset ( routineN, handle ) NULLIFY(logger) logger => cp_error_get_logger(error) @@ -502,19 +502,19 @@ CONTAINS ! EI contribution ! TODO: THIS WILL DISSAPEAR SOON. IGNORE UGLY MESS FOR NOW. - ! DO NOT FIX THE BUG THAT THE MM_RADIUS IS FORGOTTEN HERE. + ! One remaining error is that the do_ewald_none and alpha=0.0 are + ! hard-wired here. Solution is to do ei14 in fist_force_nonbond.F IF ((ei_scale14 > 0).AND.(rab2 <= rab2_max)) THEN - CALL get_atomic_kind(particle_set(index_a)%atomic_kind, qeff=qeff_a) - CALL get_atomic_kind(particle_set(index_b)%atomic_kind, qeff=qeff_b) - rinv2 = 1.0_dp/rab2 - rinv = SQRT(rinv2) + CALL get_atomic_kind(particle_set(index_a)%atomic_kind, qeff=qeff_a, mm_radius=mm_radius_a) + CALL get_atomic_kind(particle_set(index_b)%atomic_kind, qeff=qeff_b, mm_radius=mm_radius_b) + mm_radius = SQRT(mm_radius_a*mm_radius_a + mm_radius_b*mm_radius_b) + energy = potential_coulomb(rab2, fscalar, qeff_a*qeff_b*ei_scale14,& + do_ewald_none, 0.0_dp, mm_radius, 0.0_dp) IF (scale_cutoff) THEN - energy = qeff_a*qeff_b*ei_scale14*(rinv-1.0_dp/SQRT(rab2_max)) - ELSE - energy = qeff_a*qeff_b*ei_scale14*rinv + energy = energy - potential_coulomb(rab2_max, mm_radius_a,& + qeff_a*qeff_b*ei_scale14, do_ewald_none, 0.0_dp, mm_radius, 0.0_dp) END IF pot_onef = pot_onef + energy - fscalar = fscalar + qeff_a*qeff_b*ei_scale14*rinv*rinv2 END IF ! add forces diff --git a/src/fist_neighbor_list_control.F b/src/fist_neighbor_list_control.F index fe3472782e..5b824a36b3 100644 --- a/src/fist_neighbor_list_control.F +++ b/src/fist_neighbor_list_control.F @@ -82,7 +82,7 @@ CONTAINS nparticle_local, nshell, num_update, output_unit, stat LOGICAL :: build_from_scratch, failure, geo_check, shell_adiabatic, & shell_present, update_neighbor_lists - LOGICAL, DIMENSION(:, :), POINTER :: pot_type + LOGICAL, DIMENSION(:, :), POINTER :: full_nl REAL(KIND=dp) :: aup, dr2, dr2_max, lup, & verlet_skin REAL(KIND=dp), DIMENSION(3) :: dr, rab, s, s2r @@ -134,6 +134,8 @@ CONTAINS CALL section_vals_val_get(mm_section,"NEIGHBOR_LISTS%GEO_CHECK",& l_val=geo_check,error=error) IF (ASSOCIATED(r_last_update)) THEN + ! Determine the maximum of the squared displacement, compared to + ! r_last_update. CALL section_vals_val_get(mm_section,"NEIGHBOR_LISTS%VERLET_SKIN",& r_val=verlet_skin,error=error) dr2_max = 0.0_dp @@ -151,6 +153,7 @@ CONTAINS CALL mp_max(dr2_max,para_env%group) + ! If the maximum distplacement is too large, ... IF (dr2_max > 0.25_dp*verlet_skin**2.OR.build_from_scratch) THEN DO iparticle=1,nparticle r_last_update(iparticle )%r=particle_set(iparticle)%r(:) @@ -158,6 +161,7 @@ CONTAINS update_neighbor_lists = .TRUE. END IF ELSE + ! There is no r_last_update to compare with. Neighbor lists from scratch. ALLOCATE (r_last_update(nparticle),STAT=stat) CPPostcondition(stat==0,cp_failure_level,routineP,error,failure) DO iparticle=1,nparticle @@ -172,7 +176,7 @@ CONTAINS IF (force_update) update_neighbor_lists = .TRUE. END IF - ! Update the rlast_update_pbc + ! Allocate the r_last_update_pbc, rshell_last_update_pbc, rcore_last_update_pbc IF (.NOT.ASSOCIATED(r_last_update_pbc)) THEN ALLOCATE (r_last_update_pbc(nparticle),STAT=stat) CPPostcondition(stat==0,cp_failure_level,routineP,error,failure) @@ -188,20 +192,22 @@ CONTAINS ! update the neighbor lists IF (update_neighbor_lists) THEN - ALLOCATE(pot_type(nparticle_kind,nparticle_kind),stat=stat) + ! determine which pairs of atom kinds need full neighbor lists. Full + ! means that atom a is in the neighbor list of atom b and vice versa. + ALLOCATE(full_nl(nparticle_kind,nparticle_kind),stat=stat) CPPostcondition(stat==0,cp_failure_level,routineP,error,failure) IF (ASSOCIATED(potparm)) THEN DO ikind = 1, nparticle_kind DO jkind = ikind, nparticle_kind - pot_type(ikind, jkind) = .FALSE. + full_nl(ikind, jkind) = .FALSE. IF (ANY(potparm%pot(ikind, jkind)%pot%type==tersoff_type)) THEN - pot_type(ikind, jkind) = .TRUE. + full_nl(ikind, jkind) = .TRUE. END IF - pot_type(jkind, ikind) = pot_type(ikind, jkind) + full_nl(jkind, ikind) = full_nl(ikind, jkind) END DO END DO ELSE - pot_type = .FALSE. + full_nl = .FALSE. END IF CALL build_fist_neighbor_lists(atomic_kind_set,particle_set,& local_particles,cell,rlist_cutsq,rlist_lowsq,& @@ -209,7 +215,7 @@ CONTAINS build_from_scratch=build_from_scratch,& geo_check=geo_check,& mm_section=mm_section,& - pot_type=pot_type,& + full_nl=full_nl,& error=error) CALL cell_release(cell_last_update,error=error) @@ -250,10 +256,12 @@ CONTAINS END IF CALL cp_print_key_finished_output(output_unit,logger,mm_section,& "PRINT%NEIGHBOR_LISTS",error=error) - DEALLOCATE(pot_type,stat=stat) + DEALLOCATE(full_nl,stat=stat) CPPostcondition(stat==0,cp_failure_level,routineP,error,failure) END IF + ! Store particle positions after the last update, translated to the + ! primitive cell, in r_last_update_pbc. DO iparticle=1,nparticle rab = r_last_update(iparticle)%r IF (cell%orthorhombic) THEN @@ -275,6 +283,7 @@ CONTAINS rab(3) = + cell%hmat(3,1)*s(1) + cell%hmat(3,2)*s(2) + cell%hmat(3,3)*s(3) END IF r_last_update_pbc(iparticle )%r=particle_set(iparticle)%r+rab + ! Use the same translation for core and shell. ishell = particle_set(iparticle)%shell_index IF(ishell/=0) THEN rshell_last_update_pbc(ishell )%r = rab + shell_particle_set(ishell)%r(:) diff --git a/src/fist_neighbor_list_types.F b/src/fist_neighbor_list_types.F index 850bc457c8..cf40bc4be8 100644 --- a/src/fist_neighbor_list_types.F +++ b/src/fist_neighbor_list_types.F @@ -30,7 +30,16 @@ MODULE fist_neighbor_list_types INTEGER, POINTER, DIMENSION(:) :: grp_kind_start, grp_kind_end INTEGER :: cell_vector(3), npairs INTEGER :: ngrp_kind - REAL(dp) :: rmax + REAL(KIND=dp) :: rmax + ! The exclude_* arrays are flags that mark corresponding pairs in 'list' + ! for exclusion for certain types of interactions. To keep the size of + ! these arrays small, pairs that must be excluded are moved to beginning + ! of the array 'list'. nexclude is the number of elements in exclude_* + ! that is effectively used. This way one does not have to reallocate the + ! exclude_* arrays for every new exclusion. + LOGICAL, POINTER, DIMENSION(:) :: exclude_ei + LOGICAL, POINTER, DIMENSION(:) :: exclude_vdw + INTEGER :: nexclude END TYPE neighbor_kind_pairs_type ! ***************************************************************************** @@ -89,6 +98,14 @@ CONTAINS DEALLOCATE(fist_neighbor%neighbor_kind_pairs(i)%grp_kind_end, stat=stat) CPPostcondition(stat==0,cp_failure_level,routineP,error,failure) END IF + IF (ASSOCIATED(fist_neighbor%neighbor_kind_pairs(i)%exclude_ei)) THEN + DEALLOCATE(fist_neighbor%neighbor_kind_pairs(i)%exclude_ei, stat=stat) + CPPostcondition(stat==0,cp_failure_level,routineP,error,failure) + END IF + IF (ASSOCIATED(fist_neighbor%neighbor_kind_pairs(i)%exclude_vdw)) THEN + DEALLOCATE(fist_neighbor%neighbor_kind_pairs(i)%exclude_vdw, stat=stat) + CPPostcondition(stat==0,cp_failure_level,routineP,error,failure) + END IF END DO DEALLOCATE(fist_neighbor%neighbor_kind_pairs, stat=stat) CPPostcondition(stat==0,cp_failure_level,routineP,error,failure) @@ -137,6 +154,9 @@ CONTAINS list_size = SIZE(new_pairs(i)%list) ALLOCATE(new_pairs(i)%id_kind(list_size),stat=stat) CPPostcondition(stat==0,cp_failure_level,routineP,error,failure) + ALLOCATE(new_pairs(i)%exclude_ei(0),stat=stat) + ALLOCATE(new_pairs(i)%exclude_vdw(0),stat=stat) + CPPostcondition(stat==0,cp_failure_level,routineP,error,failure) NULLIFY(new_pairs(i)%ij_kind,& new_pairs(i)%grp_kind_start,& new_pairs(i)%grp_kind_end) @@ -156,6 +176,14 @@ CONTAINS DEALLOCATE(fist_neighbor%neighbor_kind_pairs(i)%grp_kind_end, stat=stat) CPPostcondition(stat==0,cp_failure_level,routineP,error,failure) END IF + IF (ASSOCIATED(fist_neighbor%neighbor_kind_pairs(i)%exclude_ei)) THEN + DEALLOCATE(fist_neighbor%neighbor_kind_pairs(i)%exclude_ei, stat=stat) + CPPostcondition(stat==0,cp_failure_level,routineP,error,failure) + END IF + IF (ASSOCIATED(fist_neighbor%neighbor_kind_pairs(i)%exclude_vdw)) THEN + DEALLOCATE(fist_neighbor%neighbor_kind_pairs(i)%exclude_vdw, stat=stat) + CPPostcondition(stat==0,cp_failure_level,routineP,error,failure) + END IF ENDDO DO i=SIZE(fist_neighbor%neighbor_kind_pairs)+1,nlistmin ALLOCATE(new_pairs(i)%list(2,0),stat=stat) @@ -183,6 +211,10 @@ CONTAINS CPPostcondition(stat==0,cp_failure_level,routineP,error,failure) ALLOCATE(fist_neighbor%neighbor_kind_pairs(i)%id_kind(0),stat=stat) CPPostcondition(stat==0,cp_failure_level,routineP,error,failure) + ALLOCATE(fist_neighbor%neighbor_kind_pairs(i)%exclude_ei(0),stat=stat) + CPPostcondition(stat==0,cp_failure_level,routineP,error,failure) + ALLOCATE(fist_neighbor%neighbor_kind_pairs(i)%exclude_vdw(0),stat=stat) + CPPostcondition(stat==0,cp_failure_level,routineP,error,failure) NULLIFY(fist_neighbor%neighbor_kind_pairs(i)%ij_kind,& fist_neighbor%neighbor_kind_pairs(i)%grp_kind_start,& fist_neighbor%neighbor_kind_pairs(i)%grp_kind_end) @@ -195,6 +227,7 @@ CONTAINS fist_neighbor%neighbor_kind_pairs(i)%list=HUGE(0) fist_neighbor%neighbor_kind_pairs(i)%id_kind=HUGE(0) fist_neighbor%neighbor_kind_pairs(i)%cell_vector=HUGE(0) + fist_neighbor%neighbor_kind_pairs(i)%nexclude = 0 ENDDO CALL timestop ( handle ) END SUBROUTINE fist_neighbor_init @@ -206,11 +239,13 @@ CONTAINS !> 08.2006 created [tlaino] !> \author Teodoro Laino ! ***************************************************************************** - SUBROUTINE fist_neighbor_add(neighbor_kind_pair, atom_a, atom_b, exclusion_list,& - particle_set, rab, added, id_kind, is_full, cell, error) + SUBROUTINE fist_neighbor_add(neighbor_kind_pair, atom_a, atom_b, & + list_exclude_ei, list_exclude_vdw, particle_set, rab, added, id_kind, & + is_full, cell, error) TYPE(neighbor_kind_pairs_type), POINTER :: neighbor_kind_pair INTEGER, INTENT(IN) :: atom_a, atom_b - INTEGER, DIMENSION(:), POINTER :: exclusion_list + INTEGER, DIMENSION(:), POINTER :: list_exclude_ei, & + list_exclude_vdw TYPE(particle_type), DIMENSION(:), & POINTER :: particle_set REAL(KIND=dp), DIMENSION(3) :: rab @@ -224,47 +259,97 @@ CONTAINS routineP = moduleN//':'//routineN REAL(KIND=dp), PARAMETER :: eps_default = EPSILON(0.0_dp)*1.0E4_dp - INTEGER :: new_size, old_size, stat + INTEGER :: new_npairs, nexclude, npairs, & + old_npairs, stat INTEGER, DIMENSION(:), POINTER :: new_id_kind INTEGER, DIMENSION(:, :), POINTER :: new_list - LOGICAL :: failure + LOGICAL :: ex_ei, ex_vdw, failure, local REAL(KIND=dp), DIMENSION(3) :: rabc - IF (ANY(exclusion_list==atom_b).AND.(.NOT.is_full)) THEN - ! Given an exclusion list only atoms connected within the shortest - ! periodic replica are assumed to be connected... - rabc = pbc(particle_set(atom_b)%r - particle_set(atom_a)%r, cell) - IF ((ALL(ABS(rab-rabc)new_list ! Kind Info - ALLOCATE(new_id_kind(new_size),stat=stat) + ALLOCATE(new_id_kind(new_npairs),stat=stat) CPPostcondition(stat==0,cp_failure_level,routineP,error,failure) - new_id_kind(1:old_size)=neighbor_kind_pair%id_kind(1:old_size) + new_id_kind(1:old_npairs)=neighbor_kind_pair%id_kind(1:old_npairs) DEALLOCATE(neighbor_kind_pair%id_kind,stat=stat) CPPostcondition(stat==0,cp_failure_level,routineP,error,failure) neighbor_kind_pair%id_kind=>new_id_kind ENDIF - neighbor_kind_pair%npairs=neighbor_kind_pair%npairs+1 - neighbor_kind_pair%list(1,neighbor_kind_pair%npairs)=atom_a - neighbor_kind_pair%list(2,neighbor_kind_pair%npairs)=atom_b - neighbor_kind_pair%id_kind(neighbor_kind_pair%npairs)=id_kind + ! Store the pair ... + npairs = neighbor_kind_pair%npairs + 1 + IF ((ex_ei.OR.ex_vdw).AND.(npairs>nexclude)) THEN + ! ... after the previous pair that had exclusion flags. + neighbor_kind_pair%list(1,npairs) = neighbor_kind_pair%list(1,nexclude) + neighbor_kind_pair%list(2,npairs) = neighbor_kind_pair%list(2,nexclude) + neighbor_kind_pair%id_kind(npairs) = neighbor_kind_pair%id_kind(nexclude) + neighbor_kind_pair%list(1,nexclude) = atom_a + neighbor_kind_pair%list(2,nexclude) = atom_b + neighbor_kind_pair%id_kind(nexclude) = id_kind + ELSE + ! ... at the end of the list. + neighbor_kind_pair%list(1,npairs) = atom_a + neighbor_kind_pair%list(2,npairs) = atom_b + neighbor_kind_pair%id_kind(npairs) = id_kind + END IF + neighbor_kind_pair%npairs = npairs END SUBROUTINE fist_neighbor_add END MODULE fist_neighbor_list_types diff --git a/src/fist_neighbor_lists.F b/src/fist_neighbor_lists.F index b89f9bde45..d192651e65 100644 --- a/src/fist_neighbor_lists.F +++ b/src/fist_neighbor_lists.F @@ -79,7 +79,7 @@ CONTAINS ! ***************************************************************************** SUBROUTINE build_fist_neighbor_lists(atomic_kind_set,particle_set,local_particles,& cell,r_max, r_minsq, nonbonded,para_env,build_from_scratch,geo_check,mm_section,& - pot_type,error) + full_nl,error) TYPE(atomic_kind_type), DIMENSION(:), & POINTER :: atomic_kind_set @@ -94,7 +94,7 @@ CONTAINS LOGICAL, INTENT(IN) :: build_from_scratch, geo_check TYPE(section_vals_type), POINTER :: mm_section LOGICAL, DIMENSION(:, :), OPTIONAL, & - POINTER :: pot_type + POINTER :: full_nl TYPE(cp_error_type), INTENT(inout) :: error CHARACTER(LEN=*), PARAMETER :: routineN = 'build_fist_neighbor_lists', & @@ -108,7 +108,7 @@ CONTAINS present_local_particles, & print_subcell_grid LOGICAL, DIMENSION(:), POINTER :: skip_kind - LOGICAL, DIMENSION(:, :), POINTER :: my_pot_type + LOGICAL, DIMENSION(:, :), POINTER :: my_full_nl TYPE(atomic_kind_type), POINTER :: atomic_kind TYPE(cp_logger_type), POINTER :: logger TYPE(local_atoms_type), ALLOCATABLE, & @@ -134,13 +134,13 @@ CONTAINS CPPostcondition(stat==0,cp_failure_level,routineP,error,failure) ALLOCATE (skip_kind(nkind),STAT=stat) CPPostcondition(stat==0,cp_failure_level,routineP,error,failure) - ! Pot_type - IF (PRESENT(pot_type)) THEN - my_pot_type => pot_type + ! full_nl + IF (PRESENT(full_nl)) THEN + my_full_nl => full_nl ELSE - ALLOCATE(my_pot_type(nkind,nkind),STAT=stat) + ALLOCATE(my_full_nl(nkind,nkind),STAT=stat) CPPostcondition(stat==0,cp_failure_level,routineP,error,failure) - my_pot_type = .FALSE. + my_full_nl = .FALSE. END IF ! Initialize the local data structures maxatom_local = 0 @@ -185,7 +185,7 @@ CONTAINS ! Build the nonbonded neighbor lists CALL build_neighbor_lists(nonbonded,particle_set,atom,cell,maxatom_local,& print_subcell_grid,output_unit,r_max,r_minsq, geo_check,"NONBONDED",& - skip_kind,my_pot_type,error) + skip_kind,my_full_nl,error) ! Sort the list according kinds for each cell CALL sort_neighbor_lists(nonbonded, nkind, error) @@ -222,10 +222,10 @@ CONTAINS CPPostcondition(stat==0,cp_failure_level,routineP,error,failure) END IF END DO - IF (PRESENT(pot_type)) THEN - NULLIFY(my_pot_type) + IF (PRESENT(full_nl)) THEN + NULLIFY(my_full_nl) ELSE - DEALLOCATE(my_pot_type,STAT=stat) + DEALLOCATE(my_full_nl,STAT=stat) CPPostcondition(stat==0,cp_failure_level,routineP,error,failure) END IF DEALLOCATE (atom,STAT=stat) @@ -564,19 +564,21 @@ CONTAINS j1 = nkind - j1 + 1 id_kind = nkind00-(j1*(j1+1)/2)+i1 ! Store the pair - CALL fist_neighbor_add(neighbor_kind_pair, atom_a, atom_b,& - exclusion_list = particle_set(atom_a)%list_exclude_vdw,& - particle_set=particle_set, rab=rab, added=added, id_kind=id_kind,& - is_full=is_full,cell=cell,error=error) + CALL fist_neighbor_add(neighbor_kind_pair, atom_a, atom_b, & + list_exclude_ei=particle_set(atom_a)%list_exclude_ei, & + list_exclude_vdw=particle_set(atom_a)%list_exclude_vdw, & + particle_set=particle_set, rab=rab, added=added, & + id_kind=id_kind, is_full=is_full, cell=cell, error=error) ! This is to handle properly when interaction radius is larger than cell size IF ((atom_a==atom_b).AND.(ik_start==0)) THEN invcellmap = cellmap(-b_pi,-b_pj,-b_pk) inv_neighbor_kind_pair => nonbonded%neighbor_kind_pairs(invcellmap) rab = rab - 2.0_dp * cell_v - CALL fist_neighbor_add(inv_neighbor_kind_pair, atom_a, atom_b,& - exclusion_list = particle_set(atom_a)%list_exclude_vdw,& - particle_set=particle_set, rab=rab, added=added, id_kind=id_kind,& - is_full=is_full,cell=cell,error=error) + CALL fist_neighbor_add(inv_neighbor_kind_pair, atom_a, atom_b, & + list_exclude_ei=particle_set(atom_a)%list_exclude_ei, & + list_exclude_vdw=particle_set(atom_a)%list_exclude_vdw, & + particle_set=particle_set, rab=rab, added=added, & + id_kind=id_kind, is_full=is_full, cell=cell, error=error) END IF ! Check for too close hits IF (added) THEN @@ -771,48 +773,61 @@ CONTAINS INTEGER :: handle, iab, id_kind, ikind, & ipair, jkind, max_alloc_size, & - npairs, stat, tmp + nexclude, npairs, stat, tmp INTEGER, ALLOCATABLE, DIMENSION(:) :: indj INTEGER, DIMENSION(:), POINTER :: work - INTEGER, DIMENSION(:, :), POINTER :: ab_work + INTEGER, DIMENSION(:, :), POINTER :: list_copy LOGICAL :: failure TYPE(neighbor_kind_pairs_type), POINTER :: neighbor_kind_pair failure = .FALSE. NULLIFY(neighbor_kind_pair) CALL timeset(routineN,handle) - max_alloc_size = nkinds*(nkinds+1)/2 - ALLOCATE(indj(max_alloc_size),stat=stat) + ! define a lookup table to get jkind for a given id_kind + ALLOCATE(indj(nkinds*(nkinds+1)/2),stat=stat) CPPostcondition(stat==0,cp_failure_level,routineP,error,failure) id_kind = 0 - Ext_Loop: DO jkind = 1, nkinds + DO jkind = 1, nkinds DO ikind = jkind, nkinds id_kind = id_kind + 1 indj(id_kind)=jkind END DO - END DO Ext_Loop + END DO + ! loop over all nlists and sort the pairs within each list. DO iab=1, nonbonded%nlists neighbor_kind_pair => nonbonded%neighbor_kind_pairs(iab) npairs = neighbor_kind_pair%npairs + nexclude = neighbor_kind_pair%nexclude IF (npairs/=0) THEN - ALLOCATE(work(1:npairs),stat=stat) + ! 1) Sort the atom pairs by id_kind. Atoms with exclusion flags are + ! not touched. + ALLOCATE(work(1:npairs-nexclude),stat=stat) CPPostcondition(stat==0,cp_failure_level,routineP,error,failure) - ALLOCATE(ab_work(2,1:npairs),stat=stat) + ALLOCATE(list_copy(2,1:npairs-nexclude),stat=stat) CPPostcondition(stat==0,cp_failure_level,routineP,error,failure) - DO ipair = 1, npairs - ab_work(1,ipair) = neighbor_kind_pair%list(1,ipair) - ab_work(2,ipair) = neighbor_kind_pair%list(2,ipair) - END DO - CALL sort(neighbor_kind_pair%id_kind,npairs,work) - ! Remap atoms - DO ipair = 1, npairs - tmp = work(ipair) - neighbor_kind_pair%list(1,ipair) = ab_work(1,tmp) - neighbor_kind_pair%list(2,ipair) = ab_work(2,tmp) + ! Copy of the pair list is required to perform the permutation below + ! correctly. + list_copy = neighbor_kind_pair%list(:,nexclude+1:npairs) + CALL sort(neighbor_kind_pair%id_kind(nexclude+1:npairs),npairs-nexclude,work) + ! Reorder atoms using the same permutation that was used to sort + ! the array id_kind. + DO ipair = nexclude+1, npairs + tmp = work(ipair-nexclude) + neighbor_kind_pair%list(1,ipair) = list_copy(1,tmp) + neighbor_kind_pair%list(2,ipair) = list_copy(2,tmp) END DO DEALLOCATE(work,stat=stat) CPPostcondition(stat==0,cp_failure_level,routineP,error,failure) - DEALLOCATE(ab_work,stat=stat) + DEALLOCATE(list_copy,stat=stat) + ! 2) determine the intervals (groups) in the pair list that correspond + ! to a certain id_kind. also store the corresponding ikind and + ! jkind. Note that this part does not assume ikind to be sorted, + ! but it only makes sense when contiguous blobs of the same ikind + ! are present. + ! Allocate sufficient memory in case all pairs of atom kinds are + ! present, and also provide storage for the pairs with exclusion + ! flags, which are unsorted. + max_alloc_size = nkinds*(nkinds+1)/2 + nexclude CPPostcondition(stat==0,cp_failure_level,routineP,error,failure) IF (ASSOCIATED(neighbor_kind_pair%grp_kind_start)) THEN DEALLOCATE(neighbor_kind_pair%grp_kind_start,stat=stat) @@ -832,32 +847,36 @@ CONTAINS END IF ALLOCATE(neighbor_kind_pair%ij_kind(2,max_alloc_size),stat=stat) CPPostcondition(stat==0,cp_failure_level,routineP,error,failure) + ! Start the first interval. ipair = 1 neighbor_kind_pair%ngrp_kind = 1 neighbor_kind_pair%grp_kind_start(neighbor_kind_pair%ngrp_kind)=ipair - jkind = indj(neighbor_kind_pair%id_kind(ipair)) + ! Get ikind and jkind corresponding to id_kind. + id_kind = neighbor_kind_pair%id_kind(ipair) + jkind = indj(id_kind) tmp = nkinds - jkind - ikind = nkinds + neighbor_kind_pair%id_kind(ipair) - max_alloc_size +& - (tmp*(tmp+1)/2) + ikind = nkinds + id_kind - nkinds*(nkinds+1)/2 + (tmp*(tmp+1)/2) neighbor_kind_pair%ij_kind(1,neighbor_kind_pair%ngrp_kind) = ikind neighbor_kind_pair%ij_kind(2,neighbor_kind_pair%ngrp_kind) = jkind - ! Define groups + ! Define the remaining intervals. DO ipair = 2, npairs IF (neighbor_kind_pair%id_kind(ipair)/=neighbor_kind_pair%id_kind(ipair-1)) THEN neighbor_kind_pair%grp_kind_end(neighbor_kind_pair%ngrp_kind) = ipair-1 neighbor_kind_pair%ngrp_kind = neighbor_kind_pair%ngrp_kind + 1 neighbor_kind_pair%grp_kind_start(neighbor_kind_pair%ngrp_kind)=ipair - ! - jkind = indj(neighbor_kind_pair%id_kind(ipair)) + ! Get ikind and jkind corresponding to id_kind. + id_kind = neighbor_kind_pair%id_kind(ipair) + jkind = indj(id_kind) tmp = nkinds - jkind - ikind = nkinds + neighbor_kind_pair%id_kind(ipair) - max_alloc_size +& - (tmp*(tmp+1)/2) + ikind = nkinds + id_kind - nkinds*(nkinds+1)/2 + (tmp*(tmp+1)/2) neighbor_kind_pair%ij_kind(1,neighbor_kind_pair%ngrp_kind) = ikind neighbor_kind_pair%ij_kind(2,neighbor_kind_pair%ngrp_kind) = jkind END IF END DO + ! Finish the last interval. neighbor_kind_pair%grp_kind_end(neighbor_kind_pair%ngrp_kind) = npairs - ! Get the real size.. + ! Reduce the grp arrays to the actual size because not all pairs of + ! atom types have to be present in this pair list. CALL reallocate(neighbor_kind_pair%grp_kind_start,1,neighbor_kind_pair%ngrp_kind) CALL reallocate(neighbor_kind_pair%grp_kind_end, 1,neighbor_kind_pair%ngrp_kind) CALL reallocate(neighbor_kind_pair%ij_kind, 1,2,1,neighbor_kind_pair%ngrp_kind) diff --git a/src/fist_nonbond_force.F b/src/fist_nonbond_force.F index c84a9456b5..e12fd13814 100644 --- a/src/fist_nonbond_force.F +++ b/src/fist_nonbond_force.F @@ -89,7 +89,8 @@ CONTAINS ipair, istart, kind_a, kind_b, nkinds, npairs, shell_a, shell_b, & shell_type INTEGER, DIMENSION(:, :), POINTER :: list - LOGICAL :: all_terms, do_multipoles, & + LOGICAL :: all_terms, do_ei, & + do_multipoles, do_vdw, & failure, full_nl, & shell_present REAL(KIND=dp) :: alpha, energy, fac, fac_kind, fscalar, mm_radius, & @@ -210,8 +211,16 @@ CONTAINS atom_a = list(1,ipair) atom_b = list(2,ipair) fac = fac_kind - IF ((.NOT.full_nl).AND.(atom_a==atom_b)) fac = fac*0.5_dp + ! decide which interactions to compute + do_ei = (.NOT. do_multipoles) + do_vdw = .TRUE. + IF (ipair <= neighbor_kind_pair%nexclude) THEN + do_ei = do_ei .AND. (.NOT. neighbor_kind_pair%exclude_ei(ipair)) + do_vdw = .NOT. neighbor_kind_pair%exclude_vdw(ipair) + END IF + + ! compute the relative vector(s) for this pair IF (shell_type/=nosh_nosh) THEN ! do shell all_terms = .TRUE. @@ -265,58 +274,61 @@ CONTAINS END IF rab_com = rab_com + cell_v rab2_com = rab_com(1)**2 + rab_com(2)**2 + rab_com(3)**2 + + ! compute the interactions IF (shell_type/=nosh_nosh) THEN ! do shell IF (rab2_com <= rab2_max .AND. all_terms) THEN - ! SHELL MODEL - ! core-core or core-ion/ion-core: Coulomb only - rab = rab_list(:,1) - rab2 = rab2_list(1) - fscalar = 0.0_dp - IF (shell_a == 0) THEN - ! atom a is a plain ion and can have mm_radius_a > 0 - energy = potential_coulomb(rab2, fscalar, & - qeff_a*qcore_b, ewald_type, alpha, & - mm_radius_a, & - ei_interaction_cutoffs(2, kind_a, kind_b)) - ELSE IF (shell_b == 0) THEN - ! atom b is a plain ion and can have mm_radius_b > 0 - energy = potential_coulomb(rab2, fscalar, & - qcore_a*qeff_b, ewald_type, alpha, & - mm_radius_b, & - ei_interaction_cutoffs(2, kind_b, kind_a)) - ELSE - ! core-core interaction is always pure point charge - energy = potential_coulomb(rab2, fscalar, & - qcore_a*qcore_b, ewald_type, alpha, 0.0_dp, & - ei_interaction_cutoffs(1, kind_a, kind_b)) - END IF - pot_nonbond = pot_nonbond + energy*fac - fscalar = fscalar*fac - fr(1) = fscalar*rab(1) - fr(2) = fscalar*rab(2) - fr(3) = fscalar*rab(3) + IF (do_ei) THEN + ! core-core or core-ion/ion-core: Coulomb only + rab = rab_list(:,1) + rab2 = rab2_list(1) + fscalar = 0.0_dp + IF (shell_a == 0) THEN + ! atom a is a plain ion and can have mm_radius_a > 0 + energy = potential_coulomb(rab2, fscalar, & + qeff_a*qcore_b, ewald_type, alpha, & + mm_radius_a, & + ei_interaction_cutoffs(2, kind_a, kind_b)) + ELSE IF (shell_b == 0) THEN + ! atom b is a plain ion and can have mm_radius_b > 0 + energy = potential_coulomb(rab2, fscalar, & + qcore_a*qeff_b, ewald_type, alpha, & + mm_radius_b, & + ei_interaction_cutoffs(2, kind_b, kind_a)) + ELSE + ! core-core interaction is always pure point charge + energy = potential_coulomb(rab2, fscalar, & + qcore_a*qcore_b, ewald_type, alpha, 0.0_dp, & + ei_interaction_cutoffs(1, kind_a, kind_b)) + END IF + pot_nonbond = pot_nonbond + energy*fac + fscalar = fscalar*fac + fr(1) = fscalar*rab(1) + fr(2) = fscalar*rab(2) + fr(3) = fscalar*rab(3) - IF(shell_a /= 0 ) THEN - fcore_nonbond(1,shell_a) = fcore_nonbond(1,shell_a) - fr(1) - fcore_nonbond(2,shell_a) = fcore_nonbond(2,shell_a) - fr(2) - fcore_nonbond(3,shell_a) = fcore_nonbond(3,shell_a) - fr(3) - ELSE - f_nonbond(1,atom_a) = f_nonbond(1,atom_a) - fr(1) - f_nonbond(2,atom_a) = f_nonbond(2,atom_a) - fr(2) - f_nonbond(3,atom_a) = f_nonbond(3,atom_a) - fr(3) - CPPostcondition(shell_b/=0,cp_failure_level,routineP,error,failure) - END IF + IF(shell_a /= 0 ) THEN + fcore_nonbond(1,shell_a) = fcore_nonbond(1,shell_a) - fr(1) + fcore_nonbond(2,shell_a) = fcore_nonbond(2,shell_a) - fr(2) + fcore_nonbond(3,shell_a) = fcore_nonbond(3,shell_a) - fr(3) + ELSE + f_nonbond(1,atom_a) = f_nonbond(1,atom_a) - fr(1) + f_nonbond(2,atom_a) = f_nonbond(2,atom_a) - fr(2) + f_nonbond(3,atom_a) = f_nonbond(3,atom_a) - fr(3) + CPPostcondition(shell_b/=0,cp_failure_level,routineP,error,failure) + END IF - IF(shell_b /= 0 ) THEN - fcore_nonbond(1,shell_b) = fcore_nonbond(1,shell_b) + fr(1) - fcore_nonbond(2,shell_b) = fcore_nonbond(2,shell_b) + fr(2) - fcore_nonbond(3,shell_b) = fcore_nonbond(3,shell_b) + fr(3) - ELSE - f_nonbond(1,atom_b) = f_nonbond(1,atom_b) + fr(1) - f_nonbond(2,atom_b) = f_nonbond(2,atom_b) + fr(2) - f_nonbond(3,atom_b) = f_nonbond(3,atom_b) + fr(3) - CPPostcondition(shell_a/=0,cp_failure_level,routineP,error,failure) + IF(shell_b /= 0 ) THEN + fcore_nonbond(1,shell_b) = fcore_nonbond(1,shell_b) + fr(1) + fcore_nonbond(2,shell_b) = fcore_nonbond(2,shell_b) + fr(2) + fcore_nonbond(3,shell_b) = fcore_nonbond(3,shell_b) + fr(3) + ELSE + f_nonbond(1,atom_b) = f_nonbond(1,atom_b) + fr(1) + f_nonbond(2,atom_b) = f_nonbond(2,atom_b) + fr(2) + f_nonbond(3,atom_b) = f_nonbond(3,atom_b) + fr(3) + CPPostcondition(shell_a/=0,cp_failure_level,routineP,error,failure) + END IF END IF IF (use_virial) THEN @@ -335,12 +347,19 @@ CONTAINS ! shell-shell : VDW + Coulomb rab = rab_list(:,4) rab2 = rab2_list(4) - energy = potential_s(spline_data,rab2,fscalar,spl_f,logger) - pot_nonbond = pot_nonbond + energy*fac - energy = potential_coulomb(rab2, fscalar, & - qshell_a*qshell_b, ewald_type, alpha, mm_radius, & - ei_interaction_cutoffs(3, kind_a, kind_b)) - pot_nonbond = pot_nonbond + energy*fac + fscalar = 0.0_dp + energy = 0.0_dp + IF (do_vdw) THEN + energy = potential_s(spline_data,rab2,fscalar,spl_f,logger) + pot_nonbond = pot_nonbond + energy*fac + END IF + IF (do_ei) THEN + ! note that potential_coulomb increments fscalar + energy = potential_coulomb(rab2, fscalar, & + qshell_a*qshell_b, ewald_type, alpha, mm_radius, & + ei_interaction_cutoffs(3, kind_a, kind_b)) + pot_nonbond = pot_nonbond + energy*fac + END IF fscalar = fscalar * fac fr(1) = fscalar*rab(1) fr(2) = fscalar*rab(2) @@ -362,78 +381,86 @@ CONTAINS pv_com(3,2) = pv_com(3,2) + rab(3) * fr(2) pv_com(3,3) = pv_com(3,3) + rab(3) * fr(3) END IF - - ! core-shell : Coulomb only - rab = rab_list(:,2) - rab2 = rab2_list(2) - fscalar = 0.0_dp - ! swap kind_a and kind_b to get the right cutoff - energy = potential_coulomb(rab2, fscalar, & - qcore_a*qshell_b, ewald_type, alpha, mm_radius_b, & - ei_interaction_cutoffs(2, kind_b, kind_a)) - fscalar = fscalar * fac - pot_nonbond = pot_nonbond + energy*fac - fscalar = fscalar*fac - fr(1) = fscalar*rab(1) - fr(2) = fscalar*rab(2) - fr(3) = fscalar*rab(3) - fcore_nonbond(1,shell_a) = fcore_nonbond(1,shell_a) - fr(1) - fcore_nonbond(2,shell_a) = fcore_nonbond(2,shell_a) - fr(2) - fcore_nonbond(3,shell_a) = fcore_nonbond(3,shell_a) - fr(3) - fshell_nonbond(1,shell_b) = fshell_nonbond(1,shell_b) + fr(1) - fshell_nonbond(2,shell_b) = fshell_nonbond(2,shell_b) + fr(2) - fshell_nonbond(3,shell_b) = fshell_nonbond(3,shell_b) + fr(3) - IF (use_virial) THEN - pv_com(1,1) = pv_com(1,1) + rab(1) * fr(1) - pv_com(1,2) = pv_com(1,2) + rab(1) * fr(2) - pv_com(1,3) = pv_com(1,3) + rab(1) * fr(3) - pv_com(2,1) = pv_com(2,1) + rab(2) * fr(1) - pv_com(2,2) = pv_com(2,2) + rab(2) * fr(2) - pv_com(2,3) = pv_com(2,3) + rab(2) * fr(3) - pv_com(3,1) = pv_com(3,1) + rab(3) * fr(1) - pv_com(3,2) = pv_com(3,2) + rab(3) * fr(2) - pv_com(3,3) = pv_com(3,3) + rab(3) * fr(3) - END IF - - ! shell-core : Coulomb only - rab = rab_list(:,3) - rab2 = rab2_list(3) - fscalar = 0.0_dp - energy = potential_coulomb(rab2, fscalar, & - qshell_a*qcore_b, ewald_type, alpha, mm_radius_a, & - ei_interaction_cutoffs(2, kind_a, kind_b)) - pot_nonbond = pot_nonbond + energy*fac - fscalar = fscalar * fac - fr(1) = fscalar*rab(1) - fr(2) = fscalar*rab(2) - fr(3) = fscalar*rab(3) - fshell_nonbond(1,shell_a) = fshell_nonbond(1,shell_a) - fr(1) - fshell_nonbond(2,shell_a) = fshell_nonbond(2,shell_a) - fr(2) - fshell_nonbond(3,shell_a) = fshell_nonbond(3,shell_a) - fr(3) - fcore_nonbond(1,shell_b) = fcore_nonbond(1,shell_b) + fr(1) - fcore_nonbond(2,shell_b) = fcore_nonbond(2,shell_b) + fr(2) - fcore_nonbond(3,shell_b) = fcore_nonbond(3,shell_b) + fr(3) - IF (use_virial) THEN - pv_com(1,1) = pv_com(1,1) + rab(1) * fr(1) - pv_com(1,2) = pv_com(1,2) + rab(1) * fr(2) - pv_com(1,3) = pv_com(1,3) + rab(1) * fr(3) - pv_com(2,1) = pv_com(2,1) + rab(2) * fr(1) - pv_com(2,2) = pv_com(2,2) + rab(2) * fr(2) - pv_com(2,3) = pv_com(2,3) + rab(2) * fr(3) - pv_com(3,1) = pv_com(3,1) + rab(3) * fr(1) - pv_com(3,2) = pv_com(3,2) + rab(3) * fr(2) - pv_com(3,3) = pv_com(3,3) + rab(3) * fr(3) + + IF (do_ei) THEN + ! core-shell : Coulomb only + rab = rab_list(:,2) + rab2 = rab2_list(2) + fscalar = 0.0_dp + ! swap kind_a and kind_b to get the right cutoff + energy = potential_coulomb(rab2, fscalar, & + qcore_a*qshell_b, ewald_type, alpha, mm_radius_b, & + ei_interaction_cutoffs(2, kind_b, kind_a)) + pot_nonbond = pot_nonbond + energy*fac + fscalar = fscalar * fac + fr(1) = fscalar*rab(1) + fr(2) = fscalar*rab(2) + fr(3) = fscalar*rab(3) + fcore_nonbond(1,shell_a) = fcore_nonbond(1,shell_a) - fr(1) + fcore_nonbond(2,shell_a) = fcore_nonbond(2,shell_a) - fr(2) + fcore_nonbond(3,shell_a) = fcore_nonbond(3,shell_a) - fr(3) + fshell_nonbond(1,shell_b) = fshell_nonbond(1,shell_b) + fr(1) + fshell_nonbond(2,shell_b) = fshell_nonbond(2,shell_b) + fr(2) + fshell_nonbond(3,shell_b) = fshell_nonbond(3,shell_b) + fr(3) + IF (use_virial) THEN + pv_com(1,1) = pv_com(1,1) + rab(1) * fr(1) + pv_com(1,2) = pv_com(1,2) + rab(1) * fr(2) + pv_com(1,3) = pv_com(1,3) + rab(1) * fr(3) + pv_com(2,1) = pv_com(2,1) + rab(2) * fr(1) + pv_com(2,2) = pv_com(2,2) + rab(2) * fr(2) + pv_com(2,3) = pv_com(2,3) + rab(2) * fr(3) + pv_com(3,1) = pv_com(3,1) + rab(3) * fr(1) + pv_com(3,2) = pv_com(3,2) + rab(3) * fr(2) + pv_com(3,3) = pv_com(3,3) + rab(3) * fr(3) + END IF + + ! shell-core : Coulomb only + rab = rab_list(:,3) + rab2 = rab2_list(3) + fscalar = 0.0_dp + energy = potential_coulomb(rab2, fscalar, & + qshell_a*qcore_b, ewald_type, alpha, mm_radius_a, & + ei_interaction_cutoffs(2, kind_a, kind_b)) + pot_nonbond = pot_nonbond + energy*fac + fscalar = fscalar * fac + fr(1) = fscalar*rab(1) + fr(2) = fscalar*rab(2) + fr(3) = fscalar*rab(3) + fshell_nonbond(1,shell_a) = fshell_nonbond(1,shell_a) - fr(1) + fshell_nonbond(2,shell_a) = fshell_nonbond(2,shell_a) - fr(2) + fshell_nonbond(3,shell_a) = fshell_nonbond(3,shell_a) - fr(3) + fcore_nonbond(1,shell_b) = fcore_nonbond(1,shell_b) + fr(1) + fcore_nonbond(2,shell_b) = fcore_nonbond(2,shell_b) + fr(2) + fcore_nonbond(3,shell_b) = fcore_nonbond(3,shell_b) + fr(3) + IF (use_virial) THEN + pv_com(1,1) = pv_com(1,1) + rab(1) * fr(1) + pv_com(1,2) = pv_com(1,2) + rab(1) * fr(2) + pv_com(1,3) = pv_com(1,3) + rab(1) * fr(3) + pv_com(2,1) = pv_com(2,1) + rab(2) * fr(1) + pv_com(2,2) = pv_com(2,2) + rab(2) * fr(2) + pv_com(2,3) = pv_com(2,3) + rab(2) * fr(3) + pv_com(3,1) = pv_com(3,1) + rab(3) * fr(1) + pv_com(3,2) = pv_com(3,2) + rab(3) * fr(2) + pv_com(3,3) = pv_com(3,3) + rab(3) * fr(3) + END IF END IF ELSE IF ((shell_type==nosh_sh) .AND. (shell_a==0)) THEN ! ion-shell : VDW + Coulomb rab = rab_list(:,4) rab2 = rab2_list(4) - energy = potential_s(spline_data,rab2,fscalar,spl_f,logger) - pot_nonbond = pot_nonbond + energy*fac - energy = potential_coulomb(rab2, fscalar, & - qeff_a*qshell_b, ewald_type, alpha, mm_radius, & - ei_interaction_cutoffs(3, kind_a, kind_b)) - pot_nonbond = pot_nonbond + energy*fac + energy = 0.0_dp + fscalar = 0.0_dp + IF (do_vdw) THEN + energy = potential_s(spline_data,rab2,fscalar,spl_f,logger) + pot_nonbond = pot_nonbond + energy*fac + END IF + IF (do_ei) THEN + ! note that potential_coulomb increments fscalar + energy = potential_coulomb(rab2, fscalar, & + qeff_a*qshell_b, ewald_type, alpha, mm_radius, & + ei_interaction_cutoffs(3, kind_a, kind_b)) + pot_nonbond = pot_nonbond + energy*fac + END IF fscalar = fscalar * fac fr(1) = fscalar*rab(1) fr(2) = fscalar*rab(2) @@ -459,12 +486,19 @@ CONTAINS ! shell-ion : VDW + Coulomb rab = rab_list(:,4) rab2 = rab2_list(4) - energy = potential_s(spline_data,rab2,fscalar,spl_f,logger) - pot_nonbond = pot_nonbond + energy*fac - energy = potential_coulomb(rab2, fscalar, & - qshell_a*qeff_b, ewald_type, alpha, mm_radius, & - ei_interaction_cutoffs(3, kind_a, kind_b)) - pot_nonbond = pot_nonbond + energy*fac + energy = 0.0_dp + fscalar = 0.0_dp + IF (do_vdw) THEN + energy = potential_s(spline_data,rab2,fscalar,spl_f,logger) + pot_nonbond = pot_nonbond + energy*fac + END IF + IF (do_ei) THEN + ! note that potential_coulomb increments fscalar + energy = potential_coulomb(rab2, fscalar, & + qshell_a*qeff_b, ewald_type, alpha, mm_radius, & + ei_interaction_cutoffs(3, kind_a, kind_b)) + pot_nonbond = pot_nonbond + energy*fac + END IF fscalar = fscalar * fac fr(1) = fscalar*rab(1) fr(2) = fscalar*rab(2) @@ -505,9 +539,14 @@ CONTAINS ! Ion-Ion: no shell model, VDW + coulomb rab = rab_com rab2 = rab2_com - energy = potential_s(spline_data,rab2,fscalar,spl_f,logger) - pot_nonbond = pot_nonbond + energy*fac - IF (.NOT.do_multipoles) THEN + energy = 0.0_dp + fscalar = 0.0_dp + IF (do_vdw) THEN + energy = potential_s(spline_data,rab2,fscalar,spl_f,logger) + pot_nonbond = pot_nonbond + energy*fac + END IF + IF (do_ei) THEN + ! note that potential_coulomb increments fscalar energy = potential_coulomb(rab2, fscalar, qeff_a*qeff_b, & ewald_type, alpha, mm_radius, & ei_interaction_cutoffs(3, kind_a, kind_b)) diff --git a/tests/Fist/regtest-14/TEST_FILES_RESET b/tests/Fist/regtest-14/TEST_FILES_RESET index e2cc898e7f..70a7a7f590 100644 --- a/tests/Fist/regtest-14/TEST_FILES_RESET +++ b/tests/Fist/regtest-14/TEST_FILES_RESET @@ -18,3 +18,10 @@ argon-gle_r.inp 12_exvdw_12_exei_list_2.inp 12_exvdw_12_exei_list_empty.inp lamol.inp +# different ei and vdw exclusion lists started working +11_exvdw_12_exei.inp +12_exvdw_12_exei_list_1_check.inp +12_exvdw_12_exei_list_1.inp +12_exvdw_12_exei_list_2_c.inp +12_exvdw_12_exei_list_2.inp + diff --git a/tests/Fist/regtest-7/TEST_FILES_RESET b/tests/Fist/regtest-7/TEST_FILES_RESET index 130cf3d9d3..a4b621db51 100644 --- a/tests/Fist/regtest-7/TEST_FILES_RESET +++ b/tests/Fist/regtest-7/TEST_FILES_RESET @@ -243,3 +243,6 @@ uo2_shell_nvt_shnosemass_r.inp uo2_shell_nvt_shnose_r.inp uo2_shell_nvt_tkind_1.inp uo2_shell_nvt_tkind.inp +# Fixed a typo in fist_nonbond_force +uo2_nvt-1.inp +uo2_nvt.inp diff --git a/tests/Fist/regtest-excl-G/TEST_FILES b/tests/Fist/regtest-excl-G/TEST_FILES new file mode 100644 index 0000000000..e1b99f0735 --- /dev/null +++ b/tests/Fist/regtest-excl-G/TEST_FILES @@ -0,0 +1,70 @@ +# runs are executed in the same order as in this file +# the second field tells which test should be run in order to compare with the last available output +# e.g. 0 means do not compare anything, running is enough +# 1 compares the last total energy in the file +# for details see cp2k/tools/do_regtest +# +ethanol_both_rcut10.0_e1-1_v1-1___G.inp 11 +ethanol_both_rcut10.0_e1-1_v1-1_R_G.inp 11 +ethanol_both_rcut10.0_e1-1_v1-1_RSG.inp 11 +ethanol_both_rcut10.0_e1-1_v1-1__SG.inp 11 +ethanol_both_rcut10.0_e1-1_v1-2___G.inp 11 +ethanol_both_rcut10.0_e1-1_v1-2_R_G.inp 11 +ethanol_both_rcut10.0_e1-1_v1-2_RSG.inp 11 +ethanol_both_rcut10.0_e1-1_v1-2__SG.inp 11 +ethanol_both_rcut10.0_e1-1_v1-3___G.inp 11 +ethanol_both_rcut10.0_e1-1_v1-3_R_G.inp 11 +ethanol_both_rcut10.0_e1-1_v1-3_RSG.inp 11 +ethanol_both_rcut10.0_e1-1_v1-3__SG.inp 11 +ethanol_both_rcut10.0_e1-1_v1-4___G.inp 11 +ethanol_both_rcut10.0_e1-1_v1-4_R_G.inp 11 +ethanol_both_rcut10.0_e1-1_v1-4_RSG.inp 11 +ethanol_both_rcut10.0_e1-1_v1-4__SG.inp 11 +ethanol_both_rcut10.0_e1-2_v1-1___G.inp 11 +ethanol_both_rcut10.0_e1-2_v1-1_R_G.inp 11 +ethanol_both_rcut10.0_e1-2_v1-1_RSG.inp 11 +ethanol_both_rcut10.0_e1-2_v1-1__SG.inp 11 +ethanol_both_rcut10.0_e1-2_v1-2___G.inp 11 +ethanol_both_rcut10.0_e1-2_v1-2_R_G.inp 11 +ethanol_both_rcut10.0_e1-2_v1-2_RSG.inp 11 +ethanol_both_rcut10.0_e1-2_v1-2__SG.inp 11 +ethanol_both_rcut10.0_e1-2_v1-3___G.inp 11 +ethanol_both_rcut10.0_e1-2_v1-3_R_G.inp 11 +ethanol_both_rcut10.0_e1-2_v1-3_RSG.inp 11 +ethanol_both_rcut10.0_e1-2_v1-3__SG.inp 11 +ethanol_both_rcut10.0_e1-2_v1-4___G.inp 11 +ethanol_both_rcut10.0_e1-2_v1-4_R_G.inp 11 +ethanol_both_rcut10.0_e1-2_v1-4_RSG.inp 11 +ethanol_both_rcut10.0_e1-2_v1-4__SG.inp 11 +ethanol_both_rcut10.0_e1-3_v1-1___G.inp 11 +ethanol_both_rcut10.0_e1-3_v1-1_R_G.inp 11 +ethanol_both_rcut10.0_e1-3_v1-1_RSG.inp 11 +ethanol_both_rcut10.0_e1-3_v1-1__SG.inp 11 +ethanol_both_rcut10.0_e1-3_v1-2___G.inp 11 +ethanol_both_rcut10.0_e1-3_v1-2_R_G.inp 11 +ethanol_both_rcut10.0_e1-3_v1-2_RSG.inp 11 +ethanol_both_rcut10.0_e1-3_v1-2__SG.inp 11 +ethanol_both_rcut10.0_e1-3_v1-3___G.inp 11 +ethanol_both_rcut10.0_e1-3_v1-3_R_G.inp 11 +ethanol_both_rcut10.0_e1-3_v1-3_RSG.inp 11 +ethanol_both_rcut10.0_e1-3_v1-3__SG.inp 11 +ethanol_both_rcut10.0_e1-3_v1-4___G.inp 11 +ethanol_both_rcut10.0_e1-3_v1-4_R_G.inp 11 +ethanol_both_rcut10.0_e1-3_v1-4_RSG.inp 11 +ethanol_both_rcut10.0_e1-3_v1-4__SG.inp 11 +ethanol_both_rcut10.0_e1-4_v1-1___G.inp 11 +ethanol_both_rcut10.0_e1-4_v1-1_R_G.inp 11 +ethanol_both_rcut10.0_e1-4_v1-1_RSG.inp 11 +ethanol_both_rcut10.0_e1-4_v1-1__SG.inp 11 +ethanol_both_rcut10.0_e1-4_v1-2___G.inp 11 +ethanol_both_rcut10.0_e1-4_v1-2_R_G.inp 11 +ethanol_both_rcut10.0_e1-4_v1-2_RSG.inp 11 +ethanol_both_rcut10.0_e1-4_v1-2__SG.inp 11 +ethanol_both_rcut10.0_e1-4_v1-3___G.inp 11 +ethanol_both_rcut10.0_e1-4_v1-3_R_G.inp 11 +ethanol_both_rcut10.0_e1-4_v1-3_RSG.inp 11 +ethanol_both_rcut10.0_e1-4_v1-3__SG.inp 11 +ethanol_both_rcut10.0_e1-4_v1-4___G.inp 11 +ethanol_both_rcut10.0_e1-4_v1-4_R_G.inp 11 +ethanol_both_rcut10.0_e1-4_v1-4_RSG.inp 11 +ethanol_both_rcut10.0_e1-4_v1-4__SG.inp 11 diff --git a/tests/Fist/regtest-excl-G/TEST_FILES_RESET b/tests/Fist/regtest-excl-G/TEST_FILES_RESET new file mode 100644 index 0000000000..2b1ddefe12 --- /dev/null +++ b/tests/Fist/regtest-excl-G/TEST_FILES_RESET @@ -0,0 +1,2 @@ +# +# just add file names for which the reference needs to be reset below, with some comment diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-1_v1-1_RSG.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-1_v1-1_RSG.inp new file mode 100644 index 0000000000..e45d0d6453 --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-1_v1-1_RSG.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is -0.0410889563051. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-1_v1-1_RSG + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-1 + EXCLUDE_VDW 1-1 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-1_v1-1_R_G.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-1_v1-1_R_G.inp new file mode 100644 index 0000000000..2b88ab54b0 --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-1_v1-1_R_G.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is -0.0474472528863. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-1_v1-1_R_G + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-1 + EXCLUDE_VDW 1-1 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-1_v1-1__SG.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-1_v1-1__SG.inp new file mode 100644 index 0000000000..71c6128daf --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-1_v1-1__SG.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is -0.0575214928911. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-1_v1-1__SG + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-1 + EXCLUDE_VDW 1-1 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-1_v1-1___G.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-1_v1-1___G.inp new file mode 100644 index 0000000000..72a2cc6780 --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-1_v1-1___G.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is -0.063879789293. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-1_v1-1___G + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-1 + EXCLUDE_VDW 1-1 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-1_v1-2_RSG.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-1_v1-2_RSG.inp new file mode 100644 index 0000000000..2a62270555 --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-1_v1-2_RSG.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is -0.0257876599402. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-1_v1-2_RSG + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-1 + EXCLUDE_VDW 1-2 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-1_v1-2_R_G.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-1_v1-2_R_G.inp new file mode 100644 index 0000000000..b7d16e3ca8 --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-1_v1-2_R_G.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is -0.0321413410971. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-1_v1-2_R_G + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-1 + EXCLUDE_VDW 1-2 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-1_v1-2__SG.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-1_v1-2__SG.inp new file mode 100644 index 0000000000..c2ba004113 --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-1_v1-2__SG.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is -0.0422201965262. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-1_v1-2__SG + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-1 + EXCLUDE_VDW 1-2 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-1_v1-2___G.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-1_v1-2___G.inp new file mode 100644 index 0000000000..0f3bfaaae3 --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-1_v1-2___G.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is -0.0485738775038. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-1_v1-2___G + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-1 + EXCLUDE_VDW 1-2 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-1_v1-3_RSG.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-1_v1-3_RSG.inp new file mode 100644 index 0000000000..b7587bc5dc --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-1_v1-3_RSG.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is -0.0231423411147. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-1_v1-3_RSG + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-1 + EXCLUDE_VDW 1-3 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-1_v1-3_R_G.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-1_v1-3_R_G.inp new file mode 100644 index 0000000000..b7d32fd553 --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-1_v1-3_R_G.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is -0.0294926900086. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-1_v1-3_R_G + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-1 + EXCLUDE_VDW 1-3 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-1_v1-3__SG.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-1_v1-3__SG.inp new file mode 100644 index 0000000000..996dda2444 --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-1_v1-3__SG.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is -0.0395748777007. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-1_v1-3__SG + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-1 + EXCLUDE_VDW 1-3 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-1_v1-3___G.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-1_v1-3___G.inp new file mode 100644 index 0000000000..5ab36642c3 --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-1_v1-3___G.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is -0.0459252264152. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-1_v1-3___G + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-1 + EXCLUDE_VDW 1-3 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-1_v1-4_RSG.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-1_v1-4_RSG.inp new file mode 100644 index 0000000000..b39dfaf8f0 --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-1_v1-4_RSG.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is -0.0230563507171. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-1_v1-4_RSG + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-1 + EXCLUDE_VDW 1-4 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-1_v1-4_R_G.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-1_v1-4_R_G.inp new file mode 100644 index 0000000000..b35f51f4dc --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-1_v1-4_R_G.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is -0.0294065540954. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-1_v1-4_R_G + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-1 + EXCLUDE_VDW 1-4 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-1_v1-4__SG.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-1_v1-4__SG.inp new file mode 100644 index 0000000000..1d0c12f65c --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-1_v1-4__SG.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is -0.0394888873032. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-1_v1-4__SG + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-1 + EXCLUDE_VDW 1-4 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-1_v1-4___G.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-1_v1-4___G.inp new file mode 100644 index 0000000000..0d5d4fff4a --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-1_v1-4___G.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is -0.0458390905021. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-1_v1-4___G + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-1 + EXCLUDE_VDW 1-4 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-2_v1-1_RSG.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-2_v1-1_RSG.inp new file mode 100644 index 0000000000..127fe5c4b2 --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-2_v1-1_RSG.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is -0.0273408731036. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-2_v1-1_RSG + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-2 + EXCLUDE_VDW 1-1 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-2_v1-1_R_G.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-2_v1-1_R_G.inp new file mode 100644 index 0000000000..8dbf023e48 --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-2_v1-1_R_G.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is -0.0315824607617. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-2_v1-1_R_G + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-2 + EXCLUDE_VDW 1-1 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-2_v1-1__SG.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-2_v1-1__SG.inp new file mode 100644 index 0000000000..cc8b379d20 --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-2_v1-1__SG.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is -0.0315803226989. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-2_v1-1__SG + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-2 + EXCLUDE_VDW 1-1 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-2_v1-1___G.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-2_v1-1___G.inp new file mode 100644 index 0000000000..c08bc09918 --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-2_v1-1___G.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is -0.0358219102676. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-2_v1-1___G + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-2 + EXCLUDE_VDW 1-1 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-2_v1-2_RSG.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-2_v1-2_RSG.inp new file mode 100644 index 0000000000..37ad5e5c6e --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-2_v1-2_RSG.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is -0.0120395767387. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-2_v1-2_RSG + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-2 + EXCLUDE_VDW 1-2 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-2_v1-2_R_G.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-2_v1-2_R_G.inp new file mode 100644 index 0000000000..ec138fe3f7 --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-2_v1-2_R_G.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is -0.0162765489725. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-2_v1-2_R_G + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-2 + EXCLUDE_VDW 1-2 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-2_v1-2__SG.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-2_v1-2__SG.inp new file mode 100644 index 0000000000..12ae19fc98 --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-2_v1-2__SG.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is -0.016279026334. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-2_v1-2__SG + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-2 + EXCLUDE_VDW 1-2 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-2_v1-2___G.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-2_v1-2___G.inp new file mode 100644 index 0000000000..81df3769c4 --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-2_v1-2___G.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is -0.0205159984784. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-2_v1-2___G + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-2 + EXCLUDE_VDW 1-2 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-2_v1-3_RSG.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-2_v1-3_RSG.inp new file mode 100644 index 0000000000..25312c93a8 --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-2_v1-3_RSG.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is -0.00939425791323. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-2_v1-3_RSG + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-2 + EXCLUDE_VDW 1-3 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-2_v1-3_R_G.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-2_v1-3_R_G.inp new file mode 100644 index 0000000000..ac9a563e52 --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-2_v1-3_R_G.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is -0.013627897884. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-2_v1-3_R_G + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-2 + EXCLUDE_VDW 1-3 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-2_v1-3__SG.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-2_v1-3__SG.inp new file mode 100644 index 0000000000..ffbd27e999 --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-2_v1-3__SG.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is -0.0136337075086. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-2_v1-3__SG + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-2 + EXCLUDE_VDW 1-3 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-2_v1-3___G.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-2_v1-3___G.inp new file mode 100644 index 0000000000..f46820dcca --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-2_v1-3___G.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is -0.0178673473898. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-2_v1-3___G + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-2 + EXCLUDE_VDW 1-3 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-2_v1-4_RSG.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-2_v1-4_RSG.inp new file mode 100644 index 0000000000..c9c8112bde --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-2_v1-4_RSG.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is -0.00930826751564. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-2_v1-4_RSG + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-2 + EXCLUDE_VDW 1-4 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-2_v1-4_R_G.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-2_v1-4_R_G.inp new file mode 100644 index 0000000000..e15c72d141 --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-2_v1-4_R_G.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is -0.0135417619708. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-2_v1-4_R_G + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-2 + EXCLUDE_VDW 1-4 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-2_v1-4__SG.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-2_v1-4__SG.inp new file mode 100644 index 0000000000..db2933196b --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-2_v1-4__SG.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is -0.013547717111. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-2_v1-4__SG + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-2 + EXCLUDE_VDW 1-4 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-2_v1-4___G.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-2_v1-4___G.inp new file mode 100644 index 0000000000..62dce82682 --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-2_v1-4___G.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is -0.0177812114767. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-2_v1-4___G + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-2 + EXCLUDE_VDW 1-4 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-3_v1-1_RSG.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-3_v1-1_RSG.inp new file mode 100644 index 0000000000..a7b3eb6512 --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-3_v1-1_RSG.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is -0.0187608913411. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-3_v1-1_RSG + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-3 + EXCLUDE_VDW 1-1 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-3_v1-1_R_G.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-3_v1-1_R_G.inp new file mode 100644 index 0000000000..18722f4785 --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-3_v1-1_R_G.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is -0.0198274156596. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-3_v1-1_R_G + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-3 + EXCLUDE_VDW 1-1 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-3_v1-1__SG.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-3_v1-1__SG.inp new file mode 100644 index 0000000000..8387fb9c92 --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-3_v1-1__SG.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is -0.0202264655482. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-3_v1-1__SG + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-3 + EXCLUDE_VDW 1-1 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-3_v1-1___G.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-3_v1-1___G.inp new file mode 100644 index 0000000000..7bd3251ace --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-3_v1-1___G.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is -0.0212929898671. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-3_v1-1___G + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-3 + EXCLUDE_VDW 1-1 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-3_v1-2_RSG.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-3_v1-2_RSG.inp new file mode 100644 index 0000000000..fbb7a711c4 --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-3_v1-2_RSG.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is -0.00345959497621. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-3_v1-2_RSG + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-3 + EXCLUDE_VDW 1-2 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-3_v1-2_R_G.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-3_v1-2_R_G.inp new file mode 100644 index 0000000000..9579a130a9 --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-3_v1-2_R_G.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is -0.00452150387044. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-3_v1-2_R_G + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-3 + EXCLUDE_VDW 1-2 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-3_v1-2__SG.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-3_v1-2__SG.inp new file mode 100644 index 0000000000..ec1678b680 --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-3_v1-2__SG.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is -0.00492516918334. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-3_v1-2__SG + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-3 + EXCLUDE_VDW 1-2 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-3_v1-2___G.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-3_v1-2___G.inp new file mode 100644 index 0000000000..3492fbb077 --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-3_v1-2___G.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is -0.00598707807794. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-3_v1-2___G + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-3 + EXCLUDE_VDW 1-2 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-3_v1-3_RSG.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-3_v1-3_RSG.inp new file mode 100644 index 0000000000..a0e1dead91 --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-3_v1-3_RSG.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is -0.000814276150765. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-3_v1-3_RSG + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-3 + EXCLUDE_VDW 1-3 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-3_v1-3_R_G.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-3_v1-3_R_G.inp new file mode 100644 index 0000000000..6c39862309 --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-3_v1-3_R_G.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is -0.00187285278188. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-3_v1-3_R_G + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-3 + EXCLUDE_VDW 1-3 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-3_v1-3__SG.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-3_v1-3__SG.inp new file mode 100644 index 0000000000..92ed39e0f5 --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-3_v1-3__SG.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is -0.0022798503579. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-3_v1-3__SG + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-3 + EXCLUDE_VDW 1-3 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-3_v1-3___G.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-3_v1-3___G.inp new file mode 100644 index 0000000000..11ba852bbd --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-3_v1-3___G.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is -0.00333842698938. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-3_v1-3___G + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-3 + EXCLUDE_VDW 1-3 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-3_v1-4_RSG.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-3_v1-4_RSG.inp new file mode 100644 index 0000000000..3b2b85e8c2 --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-3_v1-4_RSG.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is -0.000728285753171. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-3_v1-4_RSG + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-3 + EXCLUDE_VDW 1-4 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-3_v1-4_R_G.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-3_v1-4_R_G.inp new file mode 100644 index 0000000000..15e455aff3 --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-3_v1-4_R_G.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is -0.00178671686873. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-3_v1-4_R_G + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-3 + EXCLUDE_VDW 1-4 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-3_v1-4__SG.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-3_v1-4__SG.inp new file mode 100644 index 0000000000..f7173dc83a --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-3_v1-4__SG.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is -0.00219385996031. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-3_v1-4__SG + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-3 + EXCLUDE_VDW 1-4 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-3_v1-4___G.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-3_v1-4___G.inp new file mode 100644 index 0000000000..90164e59bc --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-3_v1-4___G.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is -0.00325229107623. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-3_v1-4___G + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-3 + EXCLUDE_VDW 1-4 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-4_v1-1_RSG.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-4_v1-1_RSG.inp new file mode 100644 index 0000000000..6d21a5f6ba --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-4_v1-1_RSG.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is -0.0153653312844. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-4_v1-1_RSG + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-4 + EXCLUDE_VDW 1-1 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-4_v1-1_R_G.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-4_v1-1_R_G.inp new file mode 100644 index 0000000000..3760b873ef --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-4_v1-1_R_G.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is -0.0137859695618. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-4_v1-1_R_G + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-4 + EXCLUDE_VDW 1-1 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-4_v1-1__SG.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-4_v1-1__SG.inp new file mode 100644 index 0000000000..4267f6daee --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-4_v1-1__SG.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is -0.0153653312844. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-4_v1-1__SG + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-4 + EXCLUDE_VDW 1-1 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-4_v1-1___G.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-4_v1-1___G.inp new file mode 100644 index 0000000000..6ac87ba675 --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-4_v1-1___G.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is -0.0137859695618. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-4_v1-1___G + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-4 + EXCLUDE_VDW 1-1 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-4_v1-2_RSG.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-4_v1-2_RSG.inp new file mode 100644 index 0000000000..3c10584a15 --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-4_v1-2_RSG.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is -6.40349195493e-05. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-4_v1-2_RSG + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-4 + EXCLUDE_VDW 1-2 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-4_v1-2_R_G.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-4_v1-2_R_G.inp new file mode 100644 index 0000000000..a109a87c4a --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-4_v1-2_R_G.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is 0.00151994222735. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-4_v1-2_R_G + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-4 + EXCLUDE_VDW 1-2 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-4_v1-2__SG.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-4_v1-2__SG.inp new file mode 100644 index 0000000000..4f85819b5c --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-4_v1-2__SG.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is -6.40349195457e-05. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-4_v1-2__SG + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-4 + EXCLUDE_VDW 1-2 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-4_v1-2___G.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-4_v1-2___G.inp new file mode 100644 index 0000000000..05737e3aac --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-4_v1-2___G.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is 0.00151994222736. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-4_v1-2___G + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-4 + EXCLUDE_VDW 1-2 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-4_v1-3_RSG.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-4_v1-3_RSG.inp new file mode 100644 index 0000000000..6f89c002b2 --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-4_v1-3_RSG.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is 0.00258128390589. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-4_v1-3_RSG + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-4 + EXCLUDE_VDW 1-3 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-4_v1-3_R_G.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-4_v1-3_R_G.inp new file mode 100644 index 0000000000..d8ef95341f --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-4_v1-3_R_G.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is 0.00416859331592. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-4_v1-3_R_G + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-4 + EXCLUDE_VDW 1-3 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-4_v1-3__SG.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-4_v1-3__SG.inp new file mode 100644 index 0000000000..0f995148bd --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-4_v1-3__SG.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is 0.0025812839059. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-4_v1-3__SG + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-4 + EXCLUDE_VDW 1-3 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-4_v1-3___G.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-4_v1-3___G.inp new file mode 100644 index 0000000000..83a0b86727 --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-4_v1-3___G.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is 0.00416859331592. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-4_v1-3___G + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-4 + EXCLUDE_VDW 1-3 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-4_v1-4_RSG.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-4_v1-4_RSG.inp new file mode 100644 index 0000000000..b21d50172c --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-4_v1-4_RSG.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is 0.00266727430349. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-4_v1-4_RSG + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-4 + EXCLUDE_VDW 1-4 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-4_v1-4_R_G.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-4_v1-4_R_G.inp new file mode 100644 index 0000000000..2795a49ee8 --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-4_v1-4_R_G.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is 0.00425472922907. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-4_v1-4_R_G + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-4 + EXCLUDE_VDW 1-4 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-4_v1-4__SG.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-4_v1-4__SG.inp new file mode 100644 index 0000000000..3d0e768205 --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-4_v1-4__SG.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is 0.00266727430349. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-4_v1-4__SG + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-4 + EXCLUDE_VDW 1-4 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-4_v1-4___G.inp b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-4_v1-4___G.inp new file mode 100644 index 0000000000..da47706f56 --- /dev/null +++ b/tests/Fist/regtest-excl-G/ethanol_both_rcut10.0_e1-4_v1-4___G.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is 0.00425472922907. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-4_v1-4___G + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC NONE + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC NONE + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-4 + EXCLUDE_VDW 1-4 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-G/tidy b/tests/Fist/regtest-excl-G/tidy new file mode 100644 index 0000000000..8e44cbdbc5 --- /dev/null +++ b/tests/Fist/regtest-excl-G/tidy @@ -0,0 +1,18 @@ +#!/bin/tcsh +# Script to clean files after execution of a test +echo "This script will clean the directory" $PWD "from scratch files.." +echo +foreach file (`cvs update -A -P|grep '? '|awk '{print $2}'`) + if ( ${file:e} == 'inp' ) then + echo "This files could be a new input file you don't want to be deleted.. Do you really want it deleted?" + if ( $1 == "-int" ) then + echo "You requested to run the cleaning script interactively! Forget about complains!" + rm -f $file + else + rm -i $file + endif + else + rm -f $file + endif +end +rm -f *.bak diff --git a/tests/Fist/regtest-excl-R/TEST_FILES b/tests/Fist/regtest-excl-R/TEST_FILES new file mode 100644 index 0000000000..5dee7859af --- /dev/null +++ b/tests/Fist/regtest-excl-R/TEST_FILES @@ -0,0 +1,70 @@ +# runs are executed in the same order as in this file +# the second field tells which test should be run in order to compare with the last available output +# e.g. 0 means do not compare anything, running is enough +# 1 compares the last total energy in the file +# for details see cp2k/tools/do_regtest +# +ethanol_both_rcut10.0_e1-1_v1-1___R.inp 11 +ethanol_both_rcut10.0_e1-1_v1-1_R_R.inp 11 +ethanol_both_rcut10.0_e1-1_v1-1_RSR.inp 11 +ethanol_both_rcut10.0_e1-1_v1-1__SR.inp 11 +ethanol_both_rcut10.0_e1-1_v1-2___R.inp 11 +ethanol_both_rcut10.0_e1-1_v1-2_R_R.inp 11 +ethanol_both_rcut10.0_e1-1_v1-2_RSR.inp 11 +ethanol_both_rcut10.0_e1-1_v1-2__SR.inp 11 +ethanol_both_rcut10.0_e1-1_v1-3___R.inp 11 +ethanol_both_rcut10.0_e1-1_v1-3_R_R.inp 11 +ethanol_both_rcut10.0_e1-1_v1-3_RSR.inp 11 +ethanol_both_rcut10.0_e1-1_v1-3__SR.inp 11 +ethanol_both_rcut10.0_e1-1_v1-4___R.inp 11 +ethanol_both_rcut10.0_e1-1_v1-4_R_R.inp 11 +ethanol_both_rcut10.0_e1-1_v1-4_RSR.inp 11 +ethanol_both_rcut10.0_e1-1_v1-4__SR.inp 11 +ethanol_both_rcut10.0_e1-2_v1-1___R.inp 11 +ethanol_both_rcut10.0_e1-2_v1-1_R_R.inp 11 +ethanol_both_rcut10.0_e1-2_v1-1_RSR.inp 11 +ethanol_both_rcut10.0_e1-2_v1-1__SR.inp 11 +ethanol_both_rcut10.0_e1-2_v1-2___R.inp 11 +ethanol_both_rcut10.0_e1-2_v1-2_R_R.inp 11 +ethanol_both_rcut10.0_e1-2_v1-2_RSR.inp 11 +ethanol_both_rcut10.0_e1-2_v1-2__SR.inp 11 +ethanol_both_rcut10.0_e1-2_v1-3___R.inp 11 +ethanol_both_rcut10.0_e1-2_v1-3_R_R.inp 11 +ethanol_both_rcut10.0_e1-2_v1-3_RSR.inp 11 +ethanol_both_rcut10.0_e1-2_v1-3__SR.inp 11 +ethanol_both_rcut10.0_e1-2_v1-4___R.inp 11 +ethanol_both_rcut10.0_e1-2_v1-4_R_R.inp 11 +ethanol_both_rcut10.0_e1-2_v1-4_RSR.inp 11 +ethanol_both_rcut10.0_e1-2_v1-4__SR.inp 11 +ethanol_both_rcut10.0_e1-3_v1-1___R.inp 11 +ethanol_both_rcut10.0_e1-3_v1-1_R_R.inp 11 +ethanol_both_rcut10.0_e1-3_v1-1_RSR.inp 11 +ethanol_both_rcut10.0_e1-3_v1-1__SR.inp 11 +ethanol_both_rcut10.0_e1-3_v1-2___R.inp 11 +ethanol_both_rcut10.0_e1-3_v1-2_R_R.inp 11 +ethanol_both_rcut10.0_e1-3_v1-2_RSR.inp 11 +ethanol_both_rcut10.0_e1-3_v1-2__SR.inp 11 +ethanol_both_rcut10.0_e1-3_v1-3___R.inp 11 +ethanol_both_rcut10.0_e1-3_v1-3_R_R.inp 11 +ethanol_both_rcut10.0_e1-3_v1-3_RSR.inp 11 +ethanol_both_rcut10.0_e1-3_v1-3__SR.inp 11 +ethanol_both_rcut10.0_e1-3_v1-4___R.inp 11 +ethanol_both_rcut10.0_e1-3_v1-4_R_R.inp 11 +ethanol_both_rcut10.0_e1-3_v1-4_RSR.inp 11 +ethanol_both_rcut10.0_e1-3_v1-4__SR.inp 11 +ethanol_both_rcut10.0_e1-4_v1-1___R.inp 11 +ethanol_both_rcut10.0_e1-4_v1-1_R_R.inp 11 +ethanol_both_rcut10.0_e1-4_v1-1_RSR.inp 11 +ethanol_both_rcut10.0_e1-4_v1-1__SR.inp 11 +ethanol_both_rcut10.0_e1-4_v1-2___R.inp 11 +ethanol_both_rcut10.0_e1-4_v1-2_R_R.inp 11 +ethanol_both_rcut10.0_e1-4_v1-2_RSR.inp 11 +ethanol_both_rcut10.0_e1-4_v1-2__SR.inp 11 +ethanol_both_rcut10.0_e1-4_v1-3___R.inp 11 +ethanol_both_rcut10.0_e1-4_v1-3_R_R.inp 11 +ethanol_both_rcut10.0_e1-4_v1-3_RSR.inp 11 +ethanol_both_rcut10.0_e1-4_v1-3__SR.inp 11 +ethanol_both_rcut10.0_e1-4_v1-4___R.inp 11 +ethanol_both_rcut10.0_e1-4_v1-4_R_R.inp 11 +ethanol_both_rcut10.0_e1-4_v1-4_RSR.inp 11 +ethanol_both_rcut10.0_e1-4_v1-4__SR.inp 11 diff --git a/tests/Fist/regtest-excl-R/TEST_FILES_RESET b/tests/Fist/regtest-excl-R/TEST_FILES_RESET new file mode 100644 index 0000000000..2b1ddefe12 --- /dev/null +++ b/tests/Fist/regtest-excl-R/TEST_FILES_RESET @@ -0,0 +1,2 @@ +# +# just add file names for which the reference needs to be reset below, with some comment diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-1_v1-1_RSR.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-1_v1-1_RSR.inp new file mode 100644 index 0000000000..36fb159ec3 --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-1_v1-1_RSR.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is -0.0417863723095. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-1_v1-1_RSR + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-1 + EXCLUDE_VDW 1-1 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-1_v1-1_R_R.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-1_v1-1_R_R.inp new file mode 100644 index 0000000000..729dc4bc8b --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-1_v1-1_R_R.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is -0.051398403907. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-1_v1-1_R_R + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-1 + EXCLUDE_VDW 1-1 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-1_v1-1__SR.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-1_v1-1__SR.inp new file mode 100644 index 0000000000..7ed08cc2f4 --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-1_v1-1__SR.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is -0.0582122512435. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-1_v1-1__SR + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-1 + EXCLUDE_VDW 1-1 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-1_v1-1___R.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-1_v1-1___R.inp new file mode 100644 index 0000000000..ba74f223d7 --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-1_v1-1___R.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is -0.0678242326043. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-1_v1-1___R + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-1 + EXCLUDE_VDW 1-1 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-1_v1-2_RSR.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-1_v1-2_RSR.inp new file mode 100644 index 0000000000..42546820ff --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-1_v1-2_RSR.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is -0.0264850759446. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-1_v1-2_RSR + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-1 + EXCLUDE_VDW 1-2 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-1_v1-2_R_R.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-1_v1-2_R_R.inp new file mode 100644 index 0000000000..714b39146b --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-1_v1-2_R_R.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is -0.0360924921178. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-1_v1-2_R_R + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-1 + EXCLUDE_VDW 1-2 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-1_v1-2__SR.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-1_v1-2__SR.inp new file mode 100644 index 0000000000..a0202aaf44 --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-1_v1-2__SR.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is -0.0429109548786. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-1_v1-2__SR + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-1 + EXCLUDE_VDW 1-2 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-1_v1-2___R.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-1_v1-2___R.inp new file mode 100644 index 0000000000..4737043ebf --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-1_v1-2___R.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is -0.0525183208151. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-1_v1-2___R + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-1 + EXCLUDE_VDW 1-2 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-1_v1-3_RSR.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-1_v1-3_RSR.inp new file mode 100644 index 0000000000..01304dafa0 --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-1_v1-3_RSR.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is -0.0238397571191. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-1_v1-3_RSR + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-1 + EXCLUDE_VDW 1-3 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-1_v1-3_R_R.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-1_v1-3_R_R.inp new file mode 100644 index 0000000000..7c1eec5505 --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-1_v1-3_R_R.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is -0.0334438410292. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-1_v1-3_R_R + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-1 + EXCLUDE_VDW 1-3 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-1_v1-3__SR.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-1_v1-3__SR.inp new file mode 100644 index 0000000000..01fa89562e --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-1_v1-3__SR.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is -0.0402656360531. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-1_v1-3__SR + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-1 + EXCLUDE_VDW 1-3 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-1_v1-3___R.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-1_v1-3___R.inp new file mode 100644 index 0000000000..8445b874c1 --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-1_v1-3___R.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is -0.0498696697266. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-1_v1-3___R + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-1 + EXCLUDE_VDW 1-3 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-1_v1-4_RSR.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-1_v1-4_RSR.inp new file mode 100644 index 0000000000..0755f4052e --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-1_v1-4_RSR.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is -0.0237537667215. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-1_v1-4_RSR + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-1 + EXCLUDE_VDW 1-4 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-1_v1-4_R_R.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-1_v1-4_R_R.inp new file mode 100644 index 0000000000..9553723ceb --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-1_v1-4_R_R.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is -0.0333577051161. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-1_v1-4_R_R + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-1 + EXCLUDE_VDW 1-4 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-1_v1-4__SR.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-1_v1-4__SR.inp new file mode 100644 index 0000000000..49f3f587ab --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-1_v1-4__SR.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is -0.0401796456555. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-1_v1-4__SR + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-1 + EXCLUDE_VDW 1-4 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-1_v1-4___R.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-1_v1-4___R.inp new file mode 100644 index 0000000000..5c32beec31 --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-1_v1-4___R.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is -0.0497835338134. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-1_v1-4___R + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-1 + EXCLUDE_VDW 1-4 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-2_v1-1_RSR.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-2_v1-1_RSR.inp new file mode 100644 index 0000000000..3dfc543661 --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-2_v1-1_RSR.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is -0.028038289108. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-2_v1-1_RSR + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-2 + EXCLUDE_VDW 1-1 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-2_v1-1_R_R.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-2_v1-1_R_R.inp new file mode 100644 index 0000000000..ad754ca1b3 --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-2_v1-1_R_R.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is -0.0355336117824. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-2_v1-1_R_R + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-2 + EXCLUDE_VDW 1-1 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-2_v1-1__SR.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-2_v1-1__SR.inp new file mode 100644 index 0000000000..15d0fcc29b --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-2_v1-1__SR.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is -0.0322710810513. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-2_v1-1__SR + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-2 + EXCLUDE_VDW 1-1 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-2_v1-1___R.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-2_v1-1___R.inp new file mode 100644 index 0000000000..bb5c8c3eb8 --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-2_v1-1___R.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is -0.0397663535789. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-2_v1-1___R + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-2 + EXCLUDE_VDW 1-1 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-2_v1-2_RSR.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-2_v1-2_RSR.inp new file mode 100644 index 0000000000..36d55052a4 --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-2_v1-2_RSR.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is -0.0127369927431. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-2_v1-2_RSR + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-2 + EXCLUDE_VDW 1-2 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-2_v1-2_R_R.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-2_v1-2_R_R.inp new file mode 100644 index 0000000000..92f5705b6e --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-2_v1-2_R_R.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is -0.0202276999932. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-2_v1-2_R_R + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-2 + EXCLUDE_VDW 1-2 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-2_v1-2__SR.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-2_v1-2__SR.inp new file mode 100644 index 0000000000..4828dd05fc --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-2_v1-2__SR.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is -0.0169697846864. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-2_v1-2__SR + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-2 + EXCLUDE_VDW 1-2 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-2_v1-2___R.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-2_v1-2___R.inp new file mode 100644 index 0000000000..1f1a2bed86 --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-2_v1-2___R.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is -0.0244604417897. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-2_v1-2___R + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-2 + EXCLUDE_VDW 1-2 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-2_v1-3_RSR.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-2_v1-3_RSR.inp new file mode 100644 index 0000000000..9cb6e7fac5 --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-2_v1-3_RSR.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is -0.0100916739177. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-2_v1-3_RSR + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-2 + EXCLUDE_VDW 1-3 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-2_v1-3_R_R.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-2_v1-3_R_R.inp new file mode 100644 index 0000000000..4305673366 --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-2_v1-3_R_R.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is -0.0175790489046. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-2_v1-3_R_R + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-2 + EXCLUDE_VDW 1-3 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-2_v1-3__SR.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-2_v1-3__SR.inp new file mode 100644 index 0000000000..3325a228e3 --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-2_v1-3__SR.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is -0.0143244658609. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-2_v1-3__SR + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-2 + EXCLUDE_VDW 1-3 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-2_v1-3___R.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-2_v1-3___R.inp new file mode 100644 index 0000000000..be1ac77b8f --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-2_v1-3___R.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is -0.0218117907012. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-2_v1-3___R + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-2 + EXCLUDE_VDW 1-3 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-2_v1-4_RSR.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-2_v1-4_RSR.inp new file mode 100644 index 0000000000..0107ef4010 --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-2_v1-4_RSR.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is -0.0100056835201. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-2_v1-4_RSR + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-2 + EXCLUDE_VDW 1-4 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-2_v1-4_R_R.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-2_v1-4_R_R.inp new file mode 100644 index 0000000000..06f543fe51 --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-2_v1-4_R_R.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is -0.0174929129915. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-2_v1-4_R_R + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-2 + EXCLUDE_VDW 1-4 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-2_v1-4__SR.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-2_v1-4__SR.inp new file mode 100644 index 0000000000..37acfd02cf --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-2_v1-4__SR.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is -0.0142384754633. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-2_v1-4__SR + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-2 + EXCLUDE_VDW 1-4 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-2_v1-4___R.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-2_v1-4___R.inp new file mode 100644 index 0000000000..29e25c6ba2 --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-2_v1-4___R.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is -0.021725654788. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-2_v1-4___R + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-2 + EXCLUDE_VDW 1-4 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-3_v1-1_RSR.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-3_v1-1_RSR.inp new file mode 100644 index 0000000000..120b3798a4 --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-3_v1-1_RSR.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is -0.0194583073455. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-3_v1-1_RSR + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-3 + EXCLUDE_VDW 1-1 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-3_v1-1_R_R.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-3_v1-1_R_R.inp new file mode 100644 index 0000000000..5c415f2581 --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-3_v1-1_R_R.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is -0.0237785666803. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-3_v1-1_R_R + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-3 + EXCLUDE_VDW 1-1 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-3_v1-1__SR.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-3_v1-1__SR.inp new file mode 100644 index 0000000000..c2c1d0761d --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-3_v1-1__SR.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is -0.0209172239006. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-3_v1-1__SR + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-3 + EXCLUDE_VDW 1-1 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-3_v1-1___R.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-3_v1-1___R.inp new file mode 100644 index 0000000000..26c251b670 --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-3_v1-1___R.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is -0.0252374331785. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-3_v1-1___R + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-3 + EXCLUDE_VDW 1-1 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-3_v1-2_RSR.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-3_v1-2_RSR.inp new file mode 100644 index 0000000000..086a8a94f4 --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-3_v1-2_RSR.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is -0.00415701098063. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-3_v1-2_RSR + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-3 + EXCLUDE_VDW 1-2 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-3_v1-2_R_R.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-3_v1-2_R_R.inp new file mode 100644 index 0000000000..7276a485e0 --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-3_v1-2_R_R.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is -0.0084726548911. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-3_v1-2_R_R + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-3 + EXCLUDE_VDW 1-2 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-3_v1-2__SR.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-3_v1-2__SR.inp new file mode 100644 index 0000000000..455752538a --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-3_v1-2__SR.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is -0.00561592753573. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-3_v1-2__SR + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-3 + EXCLUDE_VDW 1-2 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-3_v1-2___R.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-3_v1-2___R.inp new file mode 100644 index 0000000000..f90ac3e568 --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-3_v1-2___R.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is -0.00993152138928. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-3_v1-2___R + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-3 + EXCLUDE_VDW 1-2 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-3_v1-3_RSR.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-3_v1-3_RSR.inp new file mode 100644 index 0000000000..e5b79a4ad1 --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-3_v1-3_RSR.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is -0.00151169215519. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-3_v1-3_RSR + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-3 + EXCLUDE_VDW 1-3 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-3_v1-3_R_R.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-3_v1-3_R_R.inp new file mode 100644 index 0000000000..e36faafe04 --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-3_v1-3_R_R.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is -0.00582400380254. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-3_v1-3_R_R + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-3 + EXCLUDE_VDW 1-3 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-3_v1-3__SR.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-3_v1-3__SR.inp new file mode 100644 index 0000000000..28b5ecee5a --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-3_v1-3__SR.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is -0.00297060871028. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-3_v1-3__SR + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-3 + EXCLUDE_VDW 1-3 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-3_v1-3___R.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-3_v1-3___R.inp new file mode 100644 index 0000000000..49e397dcb2 --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-3_v1-3___R.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is -0.00728287030072. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-3_v1-3___R + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-3 + EXCLUDE_VDW 1-3 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-3_v1-4_RSR.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-3_v1-4_RSR.inp new file mode 100644 index 0000000000..4faee6bbc7 --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-3_v1-4_RSR.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is -0.00142570175759. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-3_v1-4_RSR + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-3 + EXCLUDE_VDW 1-4 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-3_v1-4_R_R.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-3_v1-4_R_R.inp new file mode 100644 index 0000000000..943cabe984 --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-3_v1-4_R_R.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is -0.00573786788939. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-3_v1-4_R_R + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-3 + EXCLUDE_VDW 1-4 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-3_v1-4__SR.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-3_v1-4__SR.inp new file mode 100644 index 0000000000..f9e7de3fdb --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-3_v1-4__SR.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is -0.00288461831269. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-3_v1-4__SR + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-3 + EXCLUDE_VDW 1-4 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-3_v1-4___R.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-3_v1-4___R.inp new file mode 100644 index 0000000000..5b143f6e40 --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-3_v1-4___R.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is -0.00719673438756. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-3_v1-4___R + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-3 + EXCLUDE_VDW 1-4 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-4_v1-1_RSR.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-4_v1-1_RSR.inp new file mode 100644 index 0000000000..64ab43ccff --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-4_v1-1_RSR.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is -0.0160627472889. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-4_v1-1_RSR + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-4 + EXCLUDE_VDW 1-1 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-4_v1-1_R_R.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-4_v1-1_R_R.inp new file mode 100644 index 0000000000..c0c8afc062 --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-4_v1-1_R_R.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is -0.0177371205825. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-4_v1-1_R_R + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-4 + EXCLUDE_VDW 1-1 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-4_v1-1__SR.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-4_v1-1__SR.inp new file mode 100644 index 0000000000..769cdaaf97 --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-4_v1-1__SR.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is -0.0160560896368. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-4_v1-1__SR + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-4 + EXCLUDE_VDW 1-1 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-4_v1-1___R.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-4_v1-1___R.inp new file mode 100644 index 0000000000..9c53f1ae33 --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-4_v1-1___R.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is -0.0177304128732. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-4_v1-1___R + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-4 + EXCLUDE_VDW 1-1 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-4_v1-2_RSR.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-4_v1-2_RSR.inp new file mode 100644 index 0000000000..0f4b648f64 --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-4_v1-2_RSR.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is -0.000761450923972. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-4_v1-2_RSR + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-4 + EXCLUDE_VDW 1-2 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-4_v1-2_R_R.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-4_v1-2_R_R.inp new file mode 100644 index 0000000000..3a894d5527 --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-4_v1-2_R_R.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is -0.0024312087933. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-4_v1-2_R_R + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-4 + EXCLUDE_VDW 1-2 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-4_v1-2__SR.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-4_v1-2__SR.inp new file mode 100644 index 0000000000..f55f24734d --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-4_v1-2__SR.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is -0.000754793271927. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-4_v1-2__SR + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-4 + EXCLUDE_VDW 1-2 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-4_v1-2___R.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-4_v1-2___R.inp new file mode 100644 index 0000000000..faaf46377c --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-4_v1-2___R.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is -0.00242450108398. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-4_v1-2___R + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-4 + EXCLUDE_VDW 1-2 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-4_v1-3_RSR.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-4_v1-3_RSR.inp new file mode 100644 index 0000000000..8abf6400a8 --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-4_v1-3_RSR.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is 0.00188386790147. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-4_v1-3_RSR + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-4 + EXCLUDE_VDW 1-3 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-4_v1-3_R_R.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-4_v1-3_R_R.inp new file mode 100644 index 0000000000..69c0a2a062 --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-4_v1-3_R_R.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is 0.000217442295256. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-4_v1-3_R_R + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-4 + EXCLUDE_VDW 1-3 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-4_v1-3__SR.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-4_v1-3__SR.inp new file mode 100644 index 0000000000..ba7fbe3d4b --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-4_v1-3__SR.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is 0.00189052555352. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-4_v1-3__SR + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-4 + EXCLUDE_VDW 1-3 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-4_v1-3___R.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-4_v1-3___R.inp new file mode 100644 index 0000000000..c10a7474b1 --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-4_v1-3___R.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is 0.000224150004581. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-4_v1-3___R + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-4 + EXCLUDE_VDW 1-3 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-4_v1-4_RSR.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-4_v1-4_RSR.inp new file mode 100644 index 0000000000..047967ec25 --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-4_v1-4_RSR.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is 0.00196985829907. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-4_v1-4_RSR + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-4 + EXCLUDE_VDW 1-4 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-4_v1-4_R_R.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-4_v1-4_R_R.inp new file mode 100644 index 0000000000..e566f4cf63 --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-4_v1-4_R_R.inp @@ -0,0 +1,224 @@ +# The expected energy for this input is 0.00030357820841. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-4_v1-4_R_R + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS +&KIND O + MM_RADIUS 2.1 +&END KIND +&KIND H + MM_RADIUS 0.5 +&END KIND +&KIND C + MM_RADIUS 1.5 +&END KIND + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-4 + EXCLUDE_VDW 1-4 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-4_v1-4__SR.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-4_v1-4__SR.inp new file mode 100644 index 0000000000..c80bca5cfc --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-4_v1-4__SR.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is 0.00197651595111. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-4_v1-4__SR + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF T +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-4 + EXCLUDE_VDW 1-4 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-4_v1-4___R.inp b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-4_v1-4___R.inp new file mode 100644 index 0000000000..820e7a08bf --- /dev/null +++ b/tests/Fist/regtest-excl-R/ethanol_both_rcut10.0_e1-4_v1-4___R.inp @@ -0,0 +1,216 @@ +# The expected energy for this input is 0.000310285917735. +&GLOBAL + PRINT_LEVEL MEDIUM + PROJECT_NAME ethanol_both_rcut10.0_e1-4_v1-4___R + RUN_TYPE energy +&END GLOBAL +&FORCE_EVAL + METHOD FIST + &MM + &FORCEFIELD + &SPLINE + EMAX_SPLINE 200.0 + EMAX_ACCURACY 100.0 + EPS_SPLINE 1.0E-8 + RCUT_NB 10.0 + R0_NB 0.8 + #UNIQUE_SPLINE T + &END SPLINE + &BOND + ATOMS C H + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C C + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS C O + K 0.0 + R0 1.0 + &END BOND + &BOND + ATOMS O H + K 0.0 + R0 1.0 + &END BOND + &BEND + ATOMS C O H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS O C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C H + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS C C O + K 0.0 + THETA0 1.0 + &END BEND + &BEND + ATOMS H C H + K 0.0 + THETA0 1.0 + &END BEND +&CHARGE +ATOM O +CHARGE -0.4 +&END CHARGE +&CHARGE +ATOM H +CHARGE 0.1 +&END CHARGE +&CHARGE +ATOM C +CHARGE -0.1 +&END CHARGE + EI_SCALE14 1.0 + VDW_SCALE14 1.0 + SCALE_CUTOFF F +&NONBONDED +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 2.31204899506 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.92956277419 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 3.71200526729 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 2.76596119741 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 3.50470815112 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 3.30898755256 +VARIABLES r +&END GENPOT +&END NONBONDED +&NONBONDED14 +&GENPOT +ATOMS H H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00380879917604 1.61843429654 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.00932961451403 2.05069394193 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS C C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0228527950562 2.59840368711 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O H +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0107729109022 1.93617283818 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O C +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0263881347549 2.45329570578 +VARIABLES r +&END GENPOT +&GENPOT +ATOMS O O +FUNCTION 4*epsilon*((sigma/(r+sigma))**12 - (sigma/(r+sigma))**6) +PARAMETERS epsilon sigma +VALUES 0.0304703934083 2.31629128679 +VARIABLES r +&END GENPOT +&END NONBONDED14 + &END FORCEFIELD + &POISSON + PERIODIC XYZ + POISSON_SOLVER ANALYTIC + &EWALD + EWALD_TYPE NONE + ALPHA 0.3 + GMAX 25 + O_SPLINE 6 + + &END EWALD + &END POISSON + &PRINT + &NEIGHBOR_LISTS + FILENAME __STD_OUT__ + &END NEIGHBOR_LISTS + &FF_INFO + &END FF_INFO + &EWALD_INFO + &END EWALD_INFO + &END PRINT + &END MM + &SUBSYS + + &CELL + ABC 8.0 8.0 8.0 + PERIODIC XYZ + &END CELL + &COORD + C -1.601187 1.908357 0.000095 + C -0.071160 1.693609 -0.000569 + O 0.545930 2.985531 0.001638 + H -2.126633 0.949947 0.000481 + H -1.913125 2.468411 0.885351 + H -1.913931 2.468140 -0.885049 + H 0.251446 1.147873 -0.889479 + H 0.251769 1.144685 0.886258 + H 1.501101 2.889364 0.001274 + &END COORD + &TOPOLOGY + &GENERATE + CREATE_MOLECULES T + &END GENERATE + EXCLUDE_EI 1-4 + EXCLUDE_VDW 1-4 + + + &END TOPOLOGY + &END SUBSYS + &END FORCE_EVAL diff --git a/tests/Fist/regtest-excl-R/tidy b/tests/Fist/regtest-excl-R/tidy new file mode 100644 index 0000000000..8e44cbdbc5 --- /dev/null +++ b/tests/Fist/regtest-excl-R/tidy @@ -0,0 +1,18 @@ +#!/bin/tcsh +# Script to clean files after execution of a test +echo "This script will clean the directory" $PWD "from scratch files.." +echo +foreach file (`cvs update -A -P|grep '? '|awk '{print $2}'`) + if ( ${file:e} == 'inp' ) then + echo "This files could be a new input file you don't want to be deleted.. Do you really want it deleted?" + if ( $1 == "-int" ) then + echo "You requested to run the cleaning script interactively! Forget about complains!" + rm -f $file + else + rm -i $file + endif + else + rm -f $file + endif +end +rm -f *.bak diff --git a/tests/TEST_DIRS b/tests/TEST_DIRS index 144b8d1479..760c1b6073 100644 --- a/tests/TEST_DIRS +++ b/tests/TEST_DIRS @@ -96,3 +96,5 @@ FE/regtest-2 ATOM/regtest-2 NEB/regtest-3 Fist/regtest-gauss +Fist/regtest-excl-G +Fist/regtest-excl-R