#!/usr/bin/env python3 import sys import re import tempfile import os import logging import argparse import errno import contextlib from os import path from hashlib import md5 from io import StringIO from prettify_cp2k import normalizeFortranFile from prettify_cp2k import replacer sys.path.insert(0, path.join(path.dirname(path.abspath(__file__)), "fprettify")) from fprettify import reformat_ffile, fparse_utils, log_exception TO_UPCASE_RE = re.compile( r""" (?P \.(?:and|eq|eqv|false|ge|gt|le|lt|ne|neqv|not|or|true)\. | (? (?: atomic|barrier|c(?:apture|ritical)|do|end|flush|if|master|num_threads|ordered|parallel|read |s(?:ection(?:|s)|ingle)|t(?:ask(?:|wait|yield)|hreadprivate)|update|w(?:orkshare|rite)|!\$omp ) | (?: a|co(?:llapse|py(?:in|private))|default|fi(?:nal|rstprivate)|i(?:and|eor|or)|lastprivate |m(?:ax|ergeable|in)|n(?:one|owait)|ordered|private|reduction|shared|untied|\.(?:and|eqv|neqv|or)\. ) | omp_(?:dynamic|max_active_levels|n(?:ested|um_threads)|proc_bind|s(?:tacksize|chedule)|thread_limit|wait_policy) ) (?![\w%]) """, flags=re.IGNORECASE | re.VERBOSE, ) LINE_PARTS_RE = re.compile( r""" (?P[^\"'!]*) (?P!.*)? (?P (?P[\"']) .*? (?P=qchar))? """, re.VERBOSE, ) @contextlib.contextmanager def rewind(fhandle): try: yield fhandle finally: fhandle.seek(0) def upcaseStringKeywords(line): """Upcases the fortran keywords, operators and intrinsic routines in line""" res = "" start = 0 while start < len(line): m = LINE_PARTS_RE.match(line[start:]) if not m: raise SyntaxError("Syntax error, open string") res = res + TO_UPCASE_RE.sub( lambda match: match.group("toUpcase").upper(), m.group("commands") ) if m.group("comment"): res = res + m.group("comment") if m.group("string"): res = res + m.group("string") start = start + m.end() return res def upcaseKeywords(infile, outfile, upcase_omp): """Writes infile to outfile with all the fortran keywords upcased""" for line in infile: line = upcaseStringKeywords(line) if upcase_omp and normalizeFortranFile.OMP_DIR_RE.match(line): line = TO_UPCASE_OMP_RE.sub( lambda match: match.group("toUpcase").upper(), line ) outfile.write(line) def prettifyFile( infile, filename, normalize_use, decl_linelength, decl_offset, reformat, indent, whitespace, upcase_keywords, upcase_omp, replace, ): """prettifyes the fortran source in infile into a temporary file that is returned. It can be the same as infile. if normalize_use normalizes the use statements (defaults to true) if upcase_keywords upcases the keywords (defaults to true) if replace does the replacements contained in replacer.py (defaults to false) does not close the input file""" max_pretty_iter = 5 logger = logging.getLogger("prettify-logger") if is_fypp(infile): logger.warning( "fypp directives not fully supported, running only fprettify", extra={"ffilename": filename}, ) replace = False normalize_use = False upcase_keywords = False # create a temporary file first as a copy of the input file inbuf = StringIO(infile.read()) hash_prev = md5(inbuf.getvalue().encode("utf8")) for _ in range(max_pretty_iter): if replace: outbuf = StringIO() replacer.replaceWords(inbuf, outbuf) outbuf.seek(0) inbuf.close() inbuf = outbuf if reformat: # reformat needs to be done first outbuf = StringIO() try: reformat_ffile( inbuf, outbuf, indent_size=indent, whitespace=whitespace, orig_filename=filename, ) except fparse_utils.FprettifyParseException as e: log_exception( e, "fprettify could not parse file, file is not prettified" ) outbuf.close() inbuf.seek(0) else: outbuf.seek(0) inbuf.close() inbuf = outbuf normalize_use_succeeded = True if normalize_use: outbuf = StringIO() try: normalizeFortranFile.rewriteFortranFile( inbuf, outbuf, indent, decl_linelength, decl_offset, orig_filename=filename, ) except normalizeFortranFile.InputStreamError as exc: logger.exception( "normalizeFortranFile could not parse file, file is not normalized", extra={"ffilename": filename}, ) outbuf.close() inbuf.seek(0) normalize_use_succeeded = False else: outbuf.seek(0) inbuf.close() inbuf = outbuf if upcase_keywords and normalize_use_succeeded: outbuf = StringIO() upcaseKeywords(inbuf, outbuf, upcase_omp) outbuf.seek(0) inbuf.close() inbuf = outbuf hash_new = md5(inbuf.getvalue().encode("utf8")) if hash_prev.digest() == hash_new.digest(): return inbuf hash_prev = hash_new else: raise RuntimeError( "Prettify did not converge in {} steps.".format(max_pretty_iter) ) def prettifyInplace(filename, backupdir=None, stdout=False, **kwargs): """Same as prettify, but inplace, replaces only if needed :return: True if file was modified, False if otherwise. If stdin/stdout, always False. """ if filename == "stdin": infile = tempfile.TemporaryFile(mode="r+") infile.write(sys.stdin.read()) infile.seek(0) else: infile = open(filename, "r", encoding="utf8") outfile = prettifyFile(infile=infile, filename=filename, **kwargs) if stdout: outfile.seek(0) sys.stdout.write(outfile.read()) outfile.close() return False if infile == outfile: infile.close() return False infile.seek(0) outfile.seek(0) changed = True for line1, line2 in zip(infile, outfile): if line1 != line2: break else: changed = False if changed: if backupdir: bkName = path.join(backupdir, path.basename(filename)) with open(bkName, "w", encoding="utf8") as fhandle: infile.seek(0) fhandle.write(infile.read()) infile.close() # close it here since we're going to overwrite it with open(filename, "w", encoding="utf8") as fhandle: outfile.seek(0) fhandle.write(outfile.read()) else: infile.close() outfile.close() return changed def is_fypp(infile): FYPP_SYMBOLS = r"(#|\$|@)" FYPP_LINE = r"^\s*" + FYPP_SYMBOLS + r":" FYPP_INLINE = r"(" + FYPP_SYMBOLS + r"{|}" + FYPP_SYMBOLS + r")" FYPP_RE = re.compile(r"(" + FYPP_LINE + r"|" + FYPP_INLINE + r")") infile.seek(0) with rewind(infile) as fhandle: for line in fhandle.readlines(): if FYPP_RE.search(line): return True return False # based on https://stackoverflow.com/a/31347222 def argparse_add_bool_arg(parser, name, default, helptxt): dname = name.replace("-", "_") group = parser.add_mutually_exclusive_group(required=False) group.add_argument( "--{}".format(name), dest=dname, action="store_true", help=helptxt ) group.add_argument("--no-{}".format(name), dest=dname, action="store_false") parser.set_defaults(**{dname: default}) # from https://stackoverflow.com/a/600612 def mkdir_p(p): try: os.makedirs(p) except OSError as exc: # Python >2.5 if exc.errno == errno.EEXIST and path.isdir(p): pass else: raise def abspath(p): return path.abspath(path.expanduser(p)) def main(argv): parser = argparse.ArgumentParser( description="Auto-format F90 source files", formatter_class=argparse.ArgumentDefaultsHelpFormatter, epilog="""\ If no files are given, stdin is used. Note: for editor integration, use options --no-normalize-use --no-report-errors""", ) parser.add_argument("--indent", type=int, default=3) parser.add_argument("--whitespace", type=int, default=2, choices=range(0, 5)) parser.add_argument("--decl-linelength", type=int, default=100) parser.add_argument("--decl-offset", type=int, default=50) parser.add_argument("--backup-dir", type=abspath, default=abspath("preprettify")) argparse_add_bool_arg(parser, "upcase", True, "Upcasing fortran keywords."), argparse_add_bool_arg( parser, "normalize-use", True, """\ Sorting and alignment of variable declarations and USE statements, removal of unused list entries. The line length of declarations is controlled by --decl-linelength=n, the offset of the variable list is controlled by --decl-offset=n.""", ) argparse_add_bool_arg(parser, "omp-upcase", True, "Upcasing OMP directives.") argparse_add_bool_arg( parser, "reformat", True, """\ Auto-indentation, auto-alignment and whitespace formatting. Amount of whitespace controlled by --whitespace = 0, 1, 2. For indenting with a relative width of n columns specify --indent=n. For manual formatting of specific lines: - disable auto-alignment by starting line continuation with an ampersand '&'. - completely disable reformatting by adding a comment '!&'. For manual formatting of a code block, use: - start a manually formatted block with a '!&<' comment and close it with a '!&>' comment.""", ) argparse_add_bool_arg( parser, "replace", True, "If requested the replacements performed by the replacer.py script are also performed. Note: these replacements are specific to CP2K.", ) argparse_add_bool_arg(parser, "stdout", False, "write output to stdout") argparse_add_bool_arg( parser, "do-backup", False, "store backups of original files in backup-dir (--backup-dir option)", ) argparse_add_bool_arg( parser, "quiet", False, "don't show summary or list of reformatted files" ) argparse_add_bool_arg(parser, "report-errors", True, "report warnings and errors") argparse_add_bool_arg(parser, "debug", False, "increase log level to debug") parser.add_argument("files", metavar="file", type=str, nargs="*", default=["stdin"]) args = parser.parse_args(argv) if args.do_backup and not (args.stdout or args.files == ["stdin"]): mkdir_p(args.backup_dir) level = logging.CRITICAL if args.report_errors: if args.debug: level = logging.DEBUG else: level = logging.ERROR # the fprettify logger provides filename and line number in case of errors shandler = logging.StreamHandler() shandler.setLevel(level) shandler.setFormatter( logging.Formatter("%(levelname)s %(ffilename)s:%(fline)s: %(message)s") ) fprettify_logger = logging.getLogger("fprettify-logger") fprettify_logger.setLevel(level) fprettify_logger.addHandler(shandler) # the prettify_cp2k loggers only provide the filename in their messages shandler = logging.StreamHandler() shandler.setLevel(level) shandler.setFormatter(logging.Formatter("%(levelname)s %(ffilename)s: %(message)s")) logger = logging.getLogger("prettify-logger") logger.setLevel(level) logger.addHandler(shandler) failure = 0 total_prettified = 0 for filename in args.files: if not path.isfile(filename) and not filename == "stdin": logger.error(f"file '{filename}' does not exist") failure += 1 continue try: changed = prettifyInplace( filename, backupdir=args.backup_dir if args.do_backup else None, stdout=args.stdout or filename == "stdin", normalize_use=args.normalize_use, decl_linelength=args.decl_linelength, decl_offset=args.decl_offset, reformat=args.reformat, indent=args.indent, whitespace=args.whitespace, upcase_keywords=args.upcase, upcase_omp=args.omp_upcase, replace=args.replace, ) if changed and not args.quiet: print(f"prettified {filename}") total_prettified += 1 except Exception: logger.exception("processing file failed", extra={"ffilename": filename}) failure += 1 if not (args.stdout or filename == "stdin" or args.quiet): print( f"{total_prettified} file(s) prettified, {len(args.files) - total_prettified} file(s) left unchanged." ) return failure > 0 if __name__ == "__main__": sys.exit(main(sys.argv[1:]))