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Fix broken links, use https over http, replace redirects

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Paul Romano 2021-03-05 08:02:53 -06:00
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8
docs/source/methods/cross_sections.rst
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@ -269,12 +269,12 @@ or even isotropic scattering.
.. _logarithmic mapping technique:
https://laws.lanl.gov/vhosts/mcnp.lanl.gov/pdf_files/la-ur-14-24530.pdf
.. _Hwang: http://www.ans.org/pubs/journals/nse/a_16381
.. _Hwang: https://doi.org/10.13182/NSE87-A16381
.. _Josey: https://doi.org/10.1016/j.jcp.2015.08.013
.. _WMP Library: https://github.com/mit-crpg/WMP_Library
.. _MCNP: http://mcnp.lanl.gov
.. _MCNP: https://mcnp.lanl.gov
.. _Serpent: http://montecarlo.vtt.fi
.. _NJOY: http://t2.lanl.gov/codes.shtml
.. _ENDF/B data: http://www.nndc.bnl.gov/endf
.. _NJOY: https://www.njoy21.io/NJOY21/
.. _ENDF/B data: https://www.nndc.bnl.gov/endf/b8.0/
.. _Leppanen: https://doi.org/10.1016/j.anucene.2009.03.019
.. _algorithms: http://ab-initio.mit.edu/wiki/index.php/Faddeeva_Package

2
docs/source/methods/geometry.rst
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@ -962,6 +962,6 @@ surface is known as in :ref:`reflection`.
.. _constructive solid geometry: https://en.wikipedia.org/wiki/Constructive_solid_geometry
.. _surfaces: https://en.wikipedia.org/wiki/Surface
.. _MCNP: http://mcnp.lanl.gov
.. _MCNP: https://mcnp.lanl.gov
.. _Serpent: http://montecarlo.vtt.fi
.. _Monte Carlo Performance benchmark: https://github.com/mit-crpg/benchmarks/tree/master/mc-performance/openmc

14
docs/source/methods/neutron_physics.rst
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@ -1695,7 +1695,7 @@ another.
.. _SIGMA1 method: https://doi.org/10.13182/NSE76-1
.. _scaled interpolation: http://www.ans.org/pubs/journals/nse/a_26575
.. _scaled interpolation: https://doi.org/10.13182/NSE73-A26575
.. _probability table method: https://doi.org/10.13182/NSE72-3
@ -1703,23 +1703,23 @@ another.
.. _Foderaro: http://hdl.handle.net/1721.1/1716
.. _OECD: http://www.oecd-nea.org/tools/abstract/detail/NEA-1792
.. _OECD: https://www.oecd-nea.org/tools/abstract/detail/NEA-1792
.. _NJOY: https://www.njoy21.io/NJOY2016/
.. _PREPRO: http://www-nds.iaea.org/ndspub/endf/prepro/
.. _PREPRO: https://www-nds.iaea.org/ndspub/endf/prepro/
.. _endf102: https://www.oecd-nea.org/dbdata/data/manual-endf/endf102.pdf
.. _Monte Carlo Sampler: https://laws.lanl.gov/vhosts/mcnp.lanl.gov/pdf_files/la-9721.pdf
.. _Monte Carlo Sampler: https://permalink.lanl.gov/object/tr?what=info:lanl-repo/lareport/LA-09721-MS
.. _LA-UR-14-27694: http://permalink.lanl.gov/object/tr?what=info:lanl-repo/lareport/LA-UR-14-27694
.. _LA-UR-14-27694: https://permalink.lanl.gov/object/tr?what=info:lanl-repo/lareport/LA-UR-14-27694
.. _MC21: http://www.osti.gov/bridge/servlets/purl/903083-HT5p1o/903083.pdf
.. _MC21: https://www.osti.gov/biblio/903083
.. _Romano: https://doi.org/10.1016/j.cpc.2014.11.001
.. _Sutton and Brown: http://www.osti.gov/bridge/product.biblio.jsp?osti_id=307911
.. _Sutton and Brown: https://www.osti.gov/biblio/307911
.. _lectures: https://laws.lanl.gov/vhosts/mcnp.lanl.gov/pdf_files/la-ur-05-4983.pdf

20
docs/source/methods/parallelization.rst
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@ -251,8 +251,8 @@ depending on how many nodes are communicating and the size of the message. Using
multiple algorithms allows one to minimize latency for small messages and
minimize bandwidth for long messages.
We will focus here on the implementation of broadcast in the MPICH2_
implementation. For short messages, MPICH2 uses a `binomial tree`_ algorithm. In
We will focus here on the implementation of broadcast in the MPICH_
implementation. For short messages, MPICH uses a `binomial tree`_ algorithm. In
this algorithm, the root process sends the data to one node in the first step,
and then in the subsequent, both the root and the other node can send the data
to other nodes. Thus, it takes a total of :math:`\lceil \log_2 p \rceil` steps
@ -266,7 +266,7 @@ to complete the communication. The time to complete the communication is
This algorithm works well for short messages since the latency term scales
logarithmically with the number of nodes. However, for long messages, an
algorithm that has lower bandwidth has been proposed by Barnett_ and implemented
in MPICH2. Rather than using a binomial tree, the broadcast is divided into a
in MPICH. Rather than using a binomial tree, the broadcast is divided into a
scatter and an allgather. The time to complete the scatter is :math:` \log_2 p
\: \alpha + \frac{p-1}{p} N\beta` using a binomial tree algorithm. The allgather
is performed using a ring algorithm that completes in :math:`p-1) \alpha +
@ -613,7 +613,7 @@ is actually independent of the number of nodes:
.. _Brissenden and Garlick: https://doi.org/10.1016/0306-4549(86)90095-2
.. _MPICH2: http://www.mcs.anl.gov/mpi/mpich
.. _MPICH: http://www.mpich.org
.. _binomial tree: https://www.mcs.anl.gov/~thakur/papers/ijhpca-coll.pdf
@ -629,19 +629,19 @@ is actually independent of the number of nodes:
.. _message-passing interface: https://en.wikipedia.org/wiki/Message_Passing_Interface
.. _PVM: http://www.csm.ornl.gov/pvm/pvm_home.html
.. _PVM: https://www.csm.ornl.gov/pvm/pvm_home.html
.. _MPI: http://www.mcs.anl.gov/research/projects/mpi/
.. _MPI: https://www.mcs.anl.gov/research/projects/mpi/
.. _embarrassingly parallel: https://en.wikipedia.org/wiki/Embarrassingly_parallel
.. _sends: http://www.mcs.anl.gov/research/projects/mpi/www/www3/MPI_Send.html
.. _sends: https://www.mpich.org//static/docs/latest/www3/MPI_Send.html
.. _broadcasts: http://www.mcs.anl.gov/research/projects/mpi/www/www3/MPI_Bcast.html
.. _broadcasts: https://www.mpich.org//static/docs/latest/www3/MPI_Bcast.html
.. _scatter: http://www.mcs.anl.gov/research/projects/mpi/www/www3/MPI_Scatter.html
.. _scatter: https://www.mpich.org//static/docs/latest/www3/MPI_Scatter.html
.. _allgather: http://www.mcs.anl.gov/research/projects/mpi/www/www3/MPI_Allgather.html
.. _allgather: https://www.mpich.org//static/docs/latest/www3/MPI_Allgather.html
.. _Cauchy distribution: https://en.wikipedia.org/wiki/Cauchy_distribution

2
docs/source/methods/photon_physics.rst
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@ -1069,6 +1069,6 @@ emitted photon.
.. _Kaltiaisenaho: https://aaltodoc.aalto.fi/bitstream/handle/123456789/21004/master_Kaltiaisenaho_Toni_2016.pdf
.. _Salvat: http://www.oecd-nea.org/globalsearch/download.php?doc=77434
.. _Salvat: https://www.oecd-nea.org/globalsearch/download.php?doc=77434
.. _Sternheimer: https://doi.org/10.1103/PhysRevB.26.6067