diff --git a/CMakeLists.txt b/CMakeLists.txt index 15c3cd1b7..2bad48f58 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -1,5 +1,5 @@ cmake_minimum_required(VERSION 3.3 FATAL_ERROR) -project(openmc CXX) +project(openmc C CXX) # Setup output directories set(CMAKE_ARCHIVE_OUTPUT_DIRECTORY ${CMAKE_BINARY_DIR}/lib) @@ -60,7 +60,7 @@ if(NOT DEFINED HDF5_PREFER_PARALLEL) endif() endif() -find_package(HDF5 REQUIRED COMPONENTS HL) +find_package(HDF5 REQUIRED COMPONENTS C HL) if(HDF5_IS_PARALLEL) if(NOT MPI_ENABLED) message(FATAL_ERROR "Parallel HDF5 must be used with MPI.") @@ -270,8 +270,8 @@ endif() # target_link_libraries treats any arguments starting with - but not -l as # linker flags. Thus, we can pass both linker flags and libraries together. -target_link_libraries(libopenmc ${ldflags} ${HDF5_LIBRARIES} pugixml - faddeeva xtensor) +target_link_libraries(libopenmc ${ldflags} ${HDF5_LIBRARIES} ${HDF5_HL_LIBRARIES} + pugixml faddeeva xtensor) if(dagmc) target_compile_definitions(libopenmc PRIVATE DAGMC) diff --git a/cmake/Modules/FindHDF5.cmake b/cmake/Modules/FindHDF5.cmake deleted file mode 100644 index 7492ea750..000000000 --- a/cmake/Modules/FindHDF5.cmake +++ /dev/null @@ -1,399 +0,0 @@ -#.rst: -# FindHDF5 -# -------- -# -# Find HDF5, a library for reading and writing self describing array data. -# -# -# -# This module invokes the HDF5 wrapper compiler that should be installed -# alongside HDF5. Depending upon the HDF5 Configuration, the wrapper -# compiler is called either h5cc or h5pcc. If this succeeds, the module -# will then call the compiler with the -show argument to see what flags -# are used when compiling an HDF5 client application. -# -# The module will optionally accept the COMPONENTS argument. If no -# COMPONENTS are specified, then the find module will default to finding -# only the HDF5 C library. If one or more COMPONENTS are specified, the -# module will attempt to find the language bindings for the specified -# components. The only valid components are C, CXX, Fortran, HL, and -# Fortran_HL. If the COMPONENTS argument is not given, the module will -# attempt to find only the C bindings. -# -# On UNIX systems, this module will read the variable -# HDF5_USE_STATIC_LIBRARIES to determine whether or not to prefer a -# static link to a dynamic link for HDF5 and all of it's dependencies. -# To use this feature, make sure that the HDF5_USE_STATIC_LIBRARIES -# variable is set before the call to find_package. -# -# To provide the module with a hint about where to find your HDF5 -# installation, you can set the environment variable HDF5_ROOT. The -# Find module will then look in this path when searching for HDF5 -# executables, paths, and libraries. -# -# In addition to finding the includes and libraries required to compile -# an HDF5 client application, this module also makes an effort to find -# tools that come with the HDF5 distribution that may be useful for -# regression testing. -# -# This module will define the following variables: -# -# :: -# -# HDF5_INCLUDE_DIRS - Location of the hdf5 includes -# HDF5_INCLUDE_DIR - Location of the hdf5 includes (deprecated) -# HDF5_DEFINITIONS - Required compiler definitions for HDF5 -# HDF5_C_LIBRARIES - Required libraries for the HDF5 C bindings. -# HDF5_CXX_LIBRARIES - Required libraries for the HDF5 C++ bindings -# HDF5_Fortran_LIBRARIES - Required libraries for the HDF5 Fortran bindings -# HDF5_HL_LIBRARIES - Required libraries for the HDF5 high level API -# HDF5_Fortran_HL_LIBRARIES - Required libraries for the high level Fortran -# bindings. -# HDF5_LIBRARIES - Required libraries for all requested bindings -# HDF5_FOUND - true if HDF5 was found on the system -# HDF5_VERSION - HDF5 version in format Major.Minor.Release -# HDF5_LIBRARY_DIRS - the full set of library directories -# HDF5_IS_PARALLEL - Whether or not HDF5 was found with parallel IO support -# HDF5_C_COMPILER_EXECUTABLE - the path to the HDF5 C wrapper compiler -# HDF5_CXX_COMPILER_EXECUTABLE - the path to the HDF5 C++ wrapper compiler -# HDF5_Fortran_COMPILER_EXECUTABLE - the path to the HDF5 Fortran wrapper compiler -# HDF5_DIFF_EXECUTABLE - the path to the HDF5 dataset comparison tool - -#============================================================================= -# Copyright 2015 Axel Huebl, Helmholtz-Zentrum Dresden - Rossendorf -# Copyright 2009 Kitware, Inc. -# -# Distributed under the OSI-approved BSD License (the "License"); -# see accompanying file Copyright.txt for details. -# -# This software is distributed WITHOUT ANY WARRANTY; without even the -# implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. -# See the License for more information. -#============================================================================= -# (To distribute this file outside of CMake, substitute the full -# License text for the above reference.) - -# This module is maintained by Will Dicharry . - -include(SelectLibraryConfigurations) -include(FindPackageHandleStandardArgs) - -# List of the valid HDF5 components -set( HDF5_VALID_COMPONENTS - C - CXX - Fortran - HL - Fortran_HL -) - -# Validate the list of find components. -if( NOT HDF5_FIND_COMPONENTS ) - set( HDF5_LANGUAGE_BINDINGS "C" ) -else() - # add the extra specified components, ensuring that they are valid. - foreach( component ${HDF5_FIND_COMPONENTS} ) - list( FIND HDF5_VALID_COMPONENTS ${component} component_location ) - if( ${component_location} EQUAL -1 ) - message( FATAL_ERROR - "\"${component}\" is not a valid HDF5 component." ) - else() - list( APPEND HDF5_LANGUAGE_BINDINGS ${component} ) - endif() - endforeach() -endif() - -# Determine whether to search for serial or parallel executable first -if(HDF5_PREFER_PARALLEL) - set(HDF5_C_COMPILER_NAMES h5pcc h5cc) - set(HDF5_CXX_COMPILER_NAMES h5pc++ h5c++) - set(HDF5_Fortran_COMPILER_NAMES h5pfc h5fc) -else() - set(HDF5_C_COMPILER_NAMES h5cc h5pcc) - set(HDF5_CXX_COMPILER_NAMES h5c++ h5pc++) - set(HDF5_Fortran_COMPILER_NAMES h5fc h5pfc) -endif() - -# try to find the HDF5 wrapper compilers -find_program( HDF5_C_COMPILER_EXECUTABLE - NAMES ${HDF5_C_COMPILER_NAMES} - HINTS ENV HDF5_ROOT - PATH_SUFFIXES bin Bin - DOC "HDF5 Wrapper compiler. Used only to detect HDF5 compile flags." ) -mark_as_advanced( HDF5_C_COMPILER_EXECUTABLE ) - -find_program( HDF5_CXX_COMPILER_EXECUTABLE - NAMES ${HDF5_CXX_COMPILER_NAMES} - HINTS ENV HDF5_ROOT - PATH_SUFFIXES bin Bin - DOC "HDF5 C++ Wrapper compiler. Used only to detect HDF5 compile flags." ) -mark_as_advanced( HDF5_CXX_COMPILER_EXECUTABLE ) - -find_program( HDF5_Fortran_COMPILER_EXECUTABLE - NAMES ${HDF5_Fortran_COMPILER_NAMES} - HINTS ENV HDF5_ROOT - PATH_SUFFIXES bin Bin - DOC "HDF5 Fortran Wrapper compiler. Used only to detect HDF5 compile flags." ) -mark_as_advanced( HDF5_Fortran_COMPILER_EXECUTABLE ) - -unset(HDF5_C_COMPILER_NAMES) -unset(HDF5_CXX_COMPILER_NAMES) -unset(HDF5_Fortran_COMPILER_NAMES) - -find_program( HDF5_DIFF_EXECUTABLE - NAMES h5diff - HINTS ENV HDF5_ROOT - PATH_SUFFIXES bin Bin - DOC "HDF5 file differencing tool." ) -mark_as_advanced( HDF5_DIFF_EXECUTABLE ) - -# Invoke the HDF5 wrapper compiler. The compiler return value is stored to the -# return_value argument, the text output is stored to the output variable. -macro( _HDF5_invoke_compiler language output return_value ) - if( HDF5_${language}_COMPILER_EXECUTABLE ) - exec_program( ${HDF5_${language}_COMPILER_EXECUTABLE} - ARGS -show - OUTPUT_VARIABLE ${output} - RETURN_VALUE ${return_value} - ) - if( ${${return_value}} EQUAL 0 ) - # do nothing - else() - message( STATUS - "Unable to determine HDF5 ${language} flags from HDF5 wrapper." ) - endif() - endif() -endmacro() - -# Parse a compile line for definitions, includes, library paths, and libraries. -macro( _HDF5_parse_compile_line - compile_line_var - include_paths - definitions - library_paths - libraries ) - - # Match the include paths - string( REGEX MATCHALL "-I([^\" ]+)" include_path_flags - "${${compile_line_var}}" - ) - foreach( IPATH ${include_path_flags} ) - string( REGEX REPLACE "^-I" "" IPATH ${IPATH} ) - string( REPLACE "//" "/" IPATH ${IPATH} ) - list( APPEND ${include_paths} ${IPATH} ) - endforeach() - - # Match the definitions - string( REGEX MATCHALL "-D[^ ]*" definition_flags "${${compile_line_var}}" ) - foreach( DEF ${definition_flags} ) - list( APPEND ${definitions} ${DEF} ) - endforeach() - - # Match the library paths - string( REGEX MATCHALL "-L([^\" ]+|\"[^\"]+\")" library_path_flags - "${${compile_line_var}}" - ) - - foreach( LPATH ${library_path_flags} ) - string( REGEX REPLACE "^-L" "" LPATH ${LPATH} ) - string( REPLACE "//" "/" LPATH ${LPATH} ) - list( APPEND ${library_paths} ${LPATH} ) - endforeach() - - # now search for the library names specified in the compile line (match -l...) - # match only -l's preceded by a space or comma - # this is to exclude directory names like xxx-linux/ - string( REGEX MATCHALL "[, ]-l([^\", ]+)" library_name_flags - "${${compile_line_var}}" ) - # strip the -l from all of the library flags and add to the search list - foreach( LIB ${library_name_flags} ) - string( REGEX REPLACE "^[, ]-l" "" LIB ${LIB} ) - list( APPEND ${libraries} ${LIB} ) - endforeach() -endmacro() - -# Try to find HDF5 using an installed hdf5-config.cmake -if( NOT HDF5_FOUND ) - find_package( HDF5 QUIET NO_MODULE ) - if( HDF5_FOUND ) - set( HDF5_INCLUDE_DIRS ${HDF5_INCLUDE_DIR} ) - set( HDF5_LIBRARIES ) - set( HDF5_C_TARGET hdf5 ) - set( HDF5_CXX_TARGET hdf5_cpp ) - set( HDF5_HL_TARGET hdf5_hl ) - set( HDF5_Fortran_TARGET hdf5_fortran ) - set( HDF5_Fortran_HL_TARGET hdf5_hl_fortran ) - foreach( _component ${HDF5_LANGUAGE_BINDINGS} ) - list( FIND HDF5_VALID_COMPONENTS ${_component} _component_location ) - get_target_property( _comp_location ${HDF5_${_component}_TARGET} LOCATION ) - if( _comp_location ) - set( HDF5_${_component}_LIBRARY ${_comp_location} CACHE PATH - "HDF5 ${_component} library" ) - mark_as_advanced( HDF5_${_component}_LIBRARY ) - list( APPEND HDF5_LIBRARIES ${HDF5_${_component}_LIBRARY} ) - endif() - endforeach() - endif() -endif() - -if( NOT HDF5_FOUND ) - _HDF5_invoke_compiler( C HDF5_C_COMPILE_LINE HDF5_C_RETURN_VALUE ) - _HDF5_invoke_compiler( CXX HDF5_CXX_COMPILE_LINE HDF5_CXX_RETURN_VALUE ) - _HDF5_invoke_compiler( Fortran HDF5_Fortran_COMPILE_LINE HDF5_Fortran_RETURN_VALUE ) - set(HDF5_HL_COMPILE_LINE ${HDF5_C_COMPILE_LINE}) - set(HDF5_Fortran_HL_COMPILE_LINE ${HDF5_Fortran_COMPILE_LINE}) - - # seed the initial lists of libraries to find with items we know we need - set( HDF5_C_LIBRARY_NAMES_INIT hdf5 ) - set( HDF5_HL_LIBRARY_NAMES_INIT hdf5_hl ${HDF5_C_LIBRARY_NAMES_INIT} ) - set( HDF5_CXX_LIBRARY_NAMES_INIT hdf5_cpp ${HDF5_C_LIBRARY_NAMES_INIT} ) - set( HDF5_Fortran_LIBRARY_NAMES_INIT hdf5_fortran - ${HDF5_C_LIBRARY_NAMES_INIT} ) - set( HDF5_Fortran_HL_LIBRARY_NAMES_INIT hdf5hl_fortran hdf5_hl - ${HDF5_Fortran_LIBRARY_NAMES_INIT} ) - - foreach( LANGUAGE ${HDF5_LANGUAGE_BINDINGS} ) - if( HDF5_${LANGUAGE}_COMPILE_LINE ) - _HDF5_parse_compile_line( HDF5_${LANGUAGE}_COMPILE_LINE - HDF5_${LANGUAGE}_INCLUDE_FLAGS - HDF5_${LANGUAGE}_DEFINITIONS - HDF5_${LANGUAGE}_LIBRARY_DIRS - HDF5_${LANGUAGE}_LIBRARY_NAMES - ) - - # take a guess that the includes may be in the 'include' sibling - # directory of a library directory. - foreach( dir ${HDF5_${LANGUAGE}_LIBRARY_DIRS} ) - list( APPEND HDF5_${LANGUAGE}_INCLUDE_FLAGS ${dir}/../include ) - endforeach() - endif() - - # set the definitions for the language bindings. - list( APPEND HDF5_DEFINITIONS ${HDF5_${LANGUAGE}_DEFINITIONS} ) - - # find the HDF5 include directories - if(${LANGUAGE} MATCHES "Fortran") - set(HDF5_INCLUDE_FILENAME hdf5.mod) - else() - set(HDF5_INCLUDE_FILENAME hdf5.h) - endif() - - find_path( HDF5_${LANGUAGE}_INCLUDE_DIR ${HDF5_INCLUDE_FILENAME} - HINTS - ${HDF5_${LANGUAGE}_INCLUDE_FLAGS} - ENV - HDF5_ROOT - PATHS - $ENV{HOME}/.local/include - PATH_SUFFIXES - include - Include - ) - mark_as_advanced( HDF5_${LANGUAGE}_INCLUDE_DIR ) - list( APPEND HDF5_INCLUDE_DIRS ${HDF5_${LANGUAGE}_INCLUDE_DIR} ) - - # find the HDF5 libraries - foreach( LIB ${HDF5_${LANGUAGE}_LIBRARY_NAMES_INIT} ) - if( UNIX AND HDF5_USE_STATIC_LIBRARIES ) - # According to bug 1643 on the CMake bug tracker, this is the - # preferred method for searching for a static library. - # See http://www.cmake.org/Bug/view.php?id=1643. We search - # first for the full static library name, but fall back to a - # generic search on the name if the static search fails. - set( THIS_LIBRARY_SEARCH_DEBUG lib${LIB}d.a ${LIB}d ) - set( THIS_LIBRARY_SEARCH_RELEASE lib${LIB}.a ${LIB} ) - else() - set( THIS_LIBRARY_SEARCH_DEBUG ${LIB}d ) - set( THIS_LIBRARY_SEARCH_RELEASE ${LIB} ) - endif() - find_library( HDF5_${LIB}_LIBRARY_DEBUG - NAMES ${THIS_LIBRARY_SEARCH_DEBUG} - HINTS ${HDF5_${LANGUAGE}_LIBRARY_DIRS} - ENV HDF5_ROOT - PATH_SUFFIXES lib Lib ) - find_library( HDF5_${LIB}_LIBRARY_RELEASE - NAMES ${THIS_LIBRARY_SEARCH_RELEASE} - HINTS ${HDF5_${LANGUAGE}_LIBRARY_DIRS} - ENV HDF5_ROOT - PATH_SUFFIXES lib Lib ) - select_library_configurations( HDF5_${LIB} ) - list(APPEND HDF5_${LANGUAGE}_LIBRARIES ${HDF5_${LIB}_LIBRARY}) - endforeach() - list( APPEND HDF5_LIBRARY_DIRS ${HDF5_${LANGUAGE}_LIBRARY_DIRS} ) - - # When the wrapper lists a library with -l, e.g. -lz, simply use it as - # is. If find_library is called for these libraries, you end up with - # local libraries that will not be suitable when cross-compiling for the - # Intel Xeon Phi. - foreach(LIBNAME ${HDF5_${LANGUAGE}_LIBRARY_NAMES}) - list(APPEND HDF5_${LANGUAGE}_LIBRARIES "-l${LIBNAME}") - endforeach() - - # Append the libraries for this language binding to the list of all - # required libraries. - list(APPEND HDF5_LIBRARIES ${HDF5_${LANGUAGE}_LIBRARIES}) - endforeach() - - # We may have picked up some duplicates in various lists during the above - # process for the language bindings (both the C and C++ bindings depend on - # libz for example). Remove the duplicates. It appears that the default - # CMake behavior is to remove duplicates from the end of a list. However, - # for link lines, this is incorrect since unresolved symbols are searched - # for down the link line. Therefore, we reverse the list, remove the - # duplicates, and then reverse it again to get the duplicates removed from - # the beginning. - macro( _remove_duplicates_from_beginning _list_name ) - list( REVERSE ${_list_name} ) - list( REMOVE_DUPLICATES ${_list_name} ) - list( REVERSE ${_list_name} ) - endmacro() - - if( HDF5_INCLUDE_DIRS ) - _remove_duplicates_from_beginning( HDF5_INCLUDE_DIRS ) - endif() - if( HDF5_LIBRARY_DIRS ) - _remove_duplicates_from_beginning( HDF5_LIBRARY_DIRS ) - endif() - - # If the HDF5 include directory was found, open H5pubconf.h to determine if - # HDF5 was compiled with parallel IO support - set( HDF5_IS_PARALLEL FALSE ) - set( HDF5_VERSION "" ) - foreach( _dir IN LISTS HDF5_INCLUDE_DIRS ) - foreach(_hdr "${_dir}/H5pubconf.h" "${_dir}/H5pubconf-64.h" "${_dir}/H5pubconf-32.h") - if( EXISTS "${_hdr}" ) - file( STRINGS "${_hdr}" - HDF5_HAVE_PARALLEL_DEFINE - REGEX "HAVE_PARALLEL 1" ) - if( HDF5_HAVE_PARALLEL_DEFINE ) - set( HDF5_IS_PARALLEL TRUE ) - endif() - unset(HDF5_HAVE_PARALLEL_DEFINE) - - file( STRINGS "${_hdr}" - HDF5_VERSION_DEFINE - REGEX "^[ \t]*#[ \t]*define[ \t]+H5_VERSION[ \t]+" ) - if( "${HDF5_VERSION_DEFINE}" MATCHES - "H5_VERSION[ \t]+\"([0-9]+\\.[0-9]+\\.[0-9]+).*\"" ) - set( HDF5_VERSION "${CMAKE_MATCH_1}" ) - endif() - unset(HDF5_VERSION_DEFINE) - endif() - endforeach() - endforeach() - set( HDF5_IS_PARALLEL ${HDF5_IS_PARALLEL} CACHE BOOL - "HDF5 library compiled with parallel IO support" ) - mark_as_advanced( HDF5_IS_PARALLEL ) - - # For backwards compatibility we set HDF5_INCLUDE_DIR to the value of - # HDF5_INCLUDE_DIRS - if( HDF5_INCLUDE_DIRS ) - set( HDF5_INCLUDE_DIR "${HDF5_INCLUDE_DIRS}" ) - endif() - -endif() - -find_package_handle_standard_args( HDF5 - REQUIRED_VARS HDF5_LIBRARIES HDF5_INCLUDE_DIRS - VERSION_VAR HDF5_VERSION -)