Use a PPA to install HDF5 and PHDF5 on Travis

.travis.yml

@@ -13,8 +13,6 @@ addons:
     - libmpich-dev
 cache:
   directories:
-  - $HOME/hdf5_install
-  - $HOME/phdf5_install
   - $HOME/nndc_hdf5
 
 before_install:
@@ -34,11 +32,13 @@ before_install:
   - source activate test-environment
 
   # Install GCC, HDF5, PHDF5
-  - ./tests/travis_install.sh
+  - sudo add-apt-repository ppa:nschloe/hdf5-backports -y
+  - sudo apt-get update -q
+  - sudo apt-get install libhdf5-serial-dev libhdf5-mpich-dev -y
   - export FC=gfortran
   - export MPI_DIR=/usr
-  - export PHDF5_DIR=$HOME/phdf5_install
-  - export HDF5_DIR=$HOME/hdf5_install
+  - export PHDF5_DIR=/usr
+  - export HDF5_DIR=/usr
 
 install: true
 

CMakeLists.txt

@@ -62,10 +62,12 @@ endif()
 # this, we check for the environment variable HDF5_ROOT and if it exists, use it
 # to check whether its a parallel version.
 
-if(DEFINED ENV{HDF5_ROOT} AND EXISTS $ENV{HDF5_ROOT}/bin/h5pcc)
-  set(HDF5_PREFER_PARALLEL TRUE)
-else()
-  set(HDF5_PREFER_PARALLEL FALSE)
+if(NOT DEFINED HDF5_PREFER_PARALLEL)
+  if(DEFINED ENV{HDF5_ROOT} AND EXISTS $ENV{HDF5_ROOT}/bin/h5pcc)
+    set(HDF5_PREFER_PARALLEL TRUE)
+  else()
+    set(HDF5_PREFER_PARALLEL FALSE)
+  endif()
 endif()
 
 find_package(HDF5 COMPONENTS Fortran_HL)

tests/run_tests.py

@@ -188,6 +188,10 @@ class Test(object):
             build_str += "-Dopenmp=OFF "
         if self.coverage:
             build_str += "-Dcoverage=ON "
+        if self.phdf5:
+            build_str += "-DHDF5_PREFER_PARALLEL=ON "
+        else:
+            build_str += "-DHDF5_PREFER_PARALLEL=OFF "
         self.build_opts = build_str
         return self.build_opts
 
@@ -214,6 +218,9 @@ class Test(object):
 
     # Runs cmake when in non-script mode
     def run_cmake(self):
+        build_opts = self.build_opts.split()
+        self.cmake += build_opts
+
         os.environ['FC'] = self.fc
         os.environ['CC'] = self.cc
         os.environ['CXX'] = self.cxx
@@ -221,10 +228,10 @@ class Test(object):
             os.environ['MPI_DIR'] = MPI_DIR
         if self.phdf5:
             os.environ['HDF5_ROOT'] = PHDF5_DIR
+            self.cmake.append('-DHDF5_PREFER_PARALLEL=ON')
         else:
             os.environ['HDF5_ROOT'] = HDF5_DIR
-        build_opts = self.build_opts.split()
-        self.cmake += build_opts
+            self.cmake.append('-DHDF5_PREFER_PARALLEL=OFF')
         rc = call(self.cmake)
         if rc != 0:
             self.success = False

tests/travis_install.sh

@@ -1,28 +0,0 @@
-#!/bin/bash
-
-set -ev
-
-# Build PHDF5
-if [[ ! -e $HOME/phdf5_install/bin/h5pfc ]]; then
-    wget -q https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8/hdf5-1.8.19/src/hdf5-1.8.19.tar.bz2
-    tar -xjf hdf5-1.8.19.tar.bz2
-    mv hdf5-1.8.19 phdf5-1.8.19
-    cd phdf5-1.8.19
-    CC=/usr/bin/mpicc FC=/usr/bin/mpif90 \
-      ./configure --prefix=$HOME/phdf5_install -q \
-      --enable-fortran --enable-fortran2003 --enable-parallel
-    make -j 2 &> /dev/null
-    make install &> /dev/null
-    cd ..
-fi
-
-# Build HDF5
-if [[ ! -e $HOME/hdf5_install/bin/h5fc ]]; then
-    tar -xjf hdf5-1.8.19.tar.bz2
-    cd hdf5-1.8.19
-    CC=gcc FC=gfortran ./configure --prefix=$HOME/hdf5_install -q \
-      --enable-fortran --enable-fortran2003
-    make -j 2 &> /dev/null
-    make install &> /dev/null
-    cd ..
-fi