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Code Issues Projects Releases Packages Wiki Activity Actions 5

Removed Summary.make_opencg_geometry() in place of openmc_geometry and opencg_geometry properties

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This commit is contained in:
Will Boyd 2015-10-28 21:22:22 -04:00
parent 96e92e4306
commit 8184b3a0f2
7 changed files with 223 additions and 204 deletions
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240
docs/source/pythonapi/examples/multi-group-cross-sections.ipynb
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57
docs/source/pythonapi/examples/pandas-dataframes.ipynb
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21
docs/source/pythonapi/examples/post-processing.ipynb
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@ -347,7 +347,7 @@
"outputs": [
{
"data": {
"image/png": "iVBORw0KGgoAAAANSUhEUgAAAPoAAAD6AgMAAAD1grKuAAAABGdBTUEAALGPC/xhBQAAAAFzUkdC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\nVDIzOjUxOjAwLTA0OjAwvsbegAAAAABJRU5ErkJggg==\n",
"image/png": "iVBORw0KGgoAAAANSUhEUgAAAPoAAAD6AgMAAAD1grKuAAAABGdBTUEAALGPC/xhBQAAAAFzUkdC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\nVDIxOjA0OjQyLTA0OjAw/RjytgAAAABJRU5ErkJggg==\n",
"text/plain": [
"<IPython.core.display.Image object>"
]
@ -458,8 +458,8 @@
" Copyright: 2011-2015 Massachusetts Institute of Technology\n",
" License: http://mit-crpg.github.io/openmc/license.html\n",
" Version: 0.7.0\n",
" Git SHA1: 170155e8d7935b57fad57bfad6aff1034a80206e\n",
" Date/Time: 2015-10-12 23:51:01\n",
" Git SHA1: 21738db07debeabde824c9b955bd3bf0c9a16366\n",
" Date/Time: 2015-10-28 21:04:43\n",
" MPI Processes: 1\n",
"\n",
" ===========================================================================\n",
@ -478,6 +478,7 @@
" Loading ACE cross section table: 1001.71c\n",
" Loading ACE cross section table: 5010.71c\n",
" Loading ACE cross section table: 40090.71c\n",
" Maximum neutron transport energy: 20.0000 MeV for 92235.71c\n",
" Initializing source particles...\n",
"\n",
" ===========================================================================\n",
@ -507,7 +508,19 @@
" 19/1 1.00071 1.04214 +/- 0.00800\n",
" 20/1 1.05587 1.04351 +/- 0.00729\n",
" 21/1 1.03886 1.04309 +/- 0.00660\n",
" 22/1 1.04335 1.04311 +/- 0.00603\n"
" 22/1 1.04335 1.04311 +/- 0.00603\n",
" 23/1 1.04057 1.04292 +/- 0.00555\n",
" 24/1 1.01976 1.04126 +/- 0.00540\n",
" 25/1 1.05811 1.04238 +/- 0.00515\n",
" 26/1 1.02351 1.04120 +/- 0.00496\n",
" 27/1 1.05261 1.04188 +/- 0.00471\n",
" 28/1 1.03355 1.04141 +/- 0.00446\n",
" 29/1 1.02797 1.04071 +/- 0.00428\n",
" 30/1 1.03758 1.04055 +/- 0.00406\n",
" 31/1 1.04883 1.04094 +/- 0.00388\n",
" 32/1 1.03557 1.04070 +/- 0.00371\n",
" 33/1 1.02947 1.04021 +/- 0.00358\n",
" 34/1 1.03651 1.04006 +/- 0.00343\n"
]
}
],

53
docs/source/pythonapi/examples/tally-arithmetic.ipynb
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@ -363,7 +363,7 @@
"outputs": [
{
"data": {
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"image/png": "iVBORw0KGgoAAAANSUhEUgAAAPoAAAD6AgMAAAD1grKuAAAABGdBTUEAALGPC/xhBQAAAAFzUkdC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\nVDIxOjE1OjA2LTA0OjAwo1FsoQAAAABJRU5ErkJggg==\n",
"text/plain": [
"<IPython.core.display.Image object>"
]
@ -573,8 +573,8 @@
" Copyright: 2011-2015 Massachusetts Institute of Technology\n",
" License: http://mit-crpg.github.io/openmc/license.html\n",
" Version: 0.7.0\n",
" Git SHA1: 170155e8d7935b57fad57bfad6aff1034a80206e\n",
" Date/Time: 2015-10-12 23:52:08\n",
" Git SHA1: 21738db07debeabde824c9b955bd3bf0c9a16366\n",
" Date/Time: 2015-10-28 21:15:07\n",
" MPI Processes: 1\n",
"\n",
" ===========================================================================\n",
@ -593,6 +593,7 @@
" Loading ACE cross section table: 1001.71c\n",
" Loading ACE cross section table: 5010.71c\n",
" Loading ACE cross section table: 40090.71c\n",
" Maximum neutron transport energy: 20.0000 MeV for 92235.71c\n",
" Initializing source particles...\n",
"\n",
" ===========================================================================\n",
@ -630,20 +631,20 @@
"\n",
" =======================> TIMING STATISTICS <=======================\n",
"\n",
" Total time for initialization = 4.1300E-01 seconds\n",
" Reading cross sections = 9.6000E-02 seconds\n",
" Total time in simulation = 1.6248E+01 seconds\n",
" Time in transport only = 1.6236E+01 seconds\n",
" Time in inactive batches = 2.3150E+00 seconds\n",
" Time in active batches = 1.3933E+01 seconds\n",
" Time synchronizing fission bank = 0.0000E+00 seconds\n",
" Sampling source sites = 0.0000E+00 seconds\n",
" SEND/RECV source sites = 0.0000E+00 seconds\n",
" Time accumulating tallies = 0.0000E+00 seconds\n",
" Total time for finalization = 2.0000E-03 seconds\n",
" Total time elapsed = 1.6672E+01 seconds\n",
" Calculation Rate (inactive) = 5399.57 neutrons/second\n",
" Calculation Rate (active) = 2691.45 neutrons/second\n",
" Total time for initialization = 6.3800E-01 seconds\n",
" Reading cross sections = 1.3500E-01 seconds\n",
" Total time in simulation = 2.3556E+01 seconds\n",
" Time in transport only = 2.3532E+01 seconds\n",
" Time in inactive batches = 3.1100E+00 seconds\n",
" Time in active batches = 2.0446E+01 seconds\n",
" Time synchronizing fission bank = 2.0000E-03 seconds\n",
" Sampling source sites = 1.0000E-03 seconds\n",
" SEND/RECV source sites = 1.0000E-03 seconds\n",
" Time accumulating tallies = 1.0000E-03 seconds\n",
" Total time for finalization = 3.0000E-03 seconds\n",
" Total time elapsed = 2.4210E+01 seconds\n",
" Calculation Rate (inactive) = 4019.29 neutrons/second\n",
" Calculation Rate (active) = 1834.10 neutrons/second\n",
"\n",
" ============================> RESULTS <============================\n",
"\n",
@ -741,7 +742,7 @@
{
"data": {
"text/html": [
"<div style=\"max-height:1000px;max-width:1500px;overflow:auto;\">\n",
"<div>\n",
"<table border=\"1\" class=\"dataframe\">\n",
" <thead>\n",
" <tr style=\"text-align: right;\">\n",
@ -801,7 +802,7 @@
{
"data": {
"text/html": [
"<div style=\"max-height:1000px;max-width:1500px;overflow:auto;\">\n",
"<div>\n",
"<table border=\"1\" class=\"dataframe\">\n",
" <thead>\n",
" <tr style=\"text-align: right;\">\n",
@ -861,7 +862,7 @@
{
"data": {
"text/html": [
"<div style=\"max-height:1000px;max-width:1500px;overflow:auto;\">\n",
"<div>\n",
"<table border=\"1\" class=\"dataframe\">\n",
" <thead>\n",
" <tr style=\"text-align: right;\">\n",
@ -920,7 +921,7 @@
{
"data": {
"text/html": [
"<div style=\"max-height:1000px;max-width:1500px;overflow:auto;\">\n",
"<div>\n",
"<table border=\"1\" class=\"dataframe\">\n",
" <thead>\n",
" <tr style=\"text-align: right;\">\n",
@ -981,7 +982,7 @@
{
"data": {
"text/html": [
"<div style=\"max-height:1000px;max-width:1500px;overflow:auto;\">\n",
"<div>\n",
"<table border=\"1\" class=\"dataframe\">\n",
" <thead>\n",
" <tr style=\"text-align: right;\">\n",
@ -1039,7 +1040,7 @@
{
"data": {
"text/html": [
"<div style=\"max-height:1000px;max-width:1500px;overflow:auto;\">\n",
"<div>\n",
"<table border=\"1\" class=\"dataframe\">\n",
" <thead>\n",
" <tr style=\"text-align: right;\">\n",
@ -1117,7 +1118,7 @@
{
"data": {
"text/html": [
"<div style=\"max-height:1000px;max-width:1500px;overflow:auto;\">\n",
"<div>\n",
"<table border=\"1\" class=\"dataframe\">\n",
" <thead>\n",
" <tr style=\"text-align: right;\">\n",
@ -1343,7 +1344,7 @@
{
"data": {
"text/html": [
"<div style=\"max-height:1000px;max-width:1500px;overflow:auto;\">\n",
"<div>\n",
"<table border=\"1\" class=\"dataframe\">\n",
" <thead>\n",
" <tr style=\"text-align: right;\">\n",
@ -1426,7 +1427,7 @@
{
"data": {
"text/html": [
"<div style=\"max-height:1000px;max-width:1500px;overflow:auto;\">\n",
"<div>\n",
"<table border=\"1\" class=\"dataframe\">\n",
" <thead>\n",
" <tr style=\"text-align: right;\">\n",

3
openmc/filter.py
View file

@ -601,8 +601,7 @@ class Filter(object):
'to use a Summary for distribcell dataframes'
raise ImportError(msg)
# Create and extract the OpenCG geometry the Summary
summary.make_opencg_geometry()
# Extract the OpenCG geometry from the Summary
opencg_geometry = summary.opencg_geometry
openmc_geometry = summary.openmc_geometry

50
openmc/summary.py
View file

@ -8,6 +8,15 @@ class Summary(object):
"""Information summarizing the geometry, materials, and tallies used in a
simulation.
Attributes
----------
openmc_geometry : openmc.Geometry
An OpenMC geometry object reconstructed from the summary file
opencg_geometry : opencg.Geometry
An OpenCG geometry object equivalent to the OpenMC geometry
encapsulated by the summary file. Use of this attribute requires
installation of the OpenCG Python module.
"""
def __init__(self, filename):
@ -23,13 +32,30 @@ class Summary(object):
raise ValueError(msg)
self._f = h5py.File(filename, 'r')
self.openmc_geometry = None
self.opencg_geometry = None
self._openmc_geometry = None
self._opencg_geometry = None
self._read_metadata()
self._read_geometry()
self._read_tallies()
@property
def openmc_geometry(self):
return self._openmc_geometry
@property
def opencg_geometry(self):
try:
from openmc.opencg_compatible import get_opencg_geometry
except ImportError:
msg = 'Unable to import OpenCG.'
raise ImportError(msg)
if self._opencg_geometry is None:
self._opencg_geometry = get_opencg_geometry(self._openmc_geometry)
return self._opencg_geometry
def _read_metadata(self):
# Read OpenMC version
self.version = [self._f['version_major'].value,
@ -444,7 +470,7 @@ class Summary(object):
def _finalize_geometry(self):
# Initialize Geometry object
self.openmc_geometry = openmc.Geometry()
self._openmc_geometry = openmc.Geometry()
# Iterate over all Cells and add fill Materials, Universes and Lattices
for cell_key in self._cell_fills.keys():
@ -468,7 +494,7 @@ class Summary(object):
# Set the root universe for the Geometry
root_universe = self.get_universe_by_id(0)
self.openmc_geometry.root_universe = root_universe
self._openmc_geometry.root_universe = root_universe
def _read_tallies(self):
# Initialize dictionaries for the Tallies
@ -531,22 +557,6 @@ class Summary(object):
# Add Tally to the global dictionary of all Tallies
self.tallies[tally_id] = tally
def make_opencg_geometry(self):
"""Create OpenCG geometry based on the information contained in the summary
file. The geometry is stored as the 'opencg_geometry' attribute.
"""
try:
from openmc.opencg_compatible import get_opencg_geometry
except ImportError:
msg = 'Unable to import opencg which is needed ' \
'by Summary.make_opencg_geometry()'
raise ImportError(msg)
if self.opencg_geometry is None:
self.opencg_geometry = get_opencg_geometry(self.openmc_geometry)
def get_material_by_id(self, material_id):
"""Return a Material object given the material id

3
openmc/tallies.py
View file

@ -2107,6 +2107,9 @@ class Tally(object):
return new_tally
def __div__(self, other):
return self.__truediv__(other)
def __pow__(self, power):
"""Raises this tally to another tally or scalar value power.