Updating version of cmake.

Adding netcdf libraries to CI.

Adding libmesh job.

Extending prefix path for libmesh to the  directory.

A couple more tweaks to the libmesh paths.

Updating how libmesh is installed. Relying on MOOSE install scripts.

.github/workflows/ci.yml

@@ -30,6 +30,7 @@ jobs:
         mpi: [n, y]
         omp: [n, y]
         dagmc: [n]
+        libmesh: [n]
         event: [n]
         vectfit: [n]
 
@@ -44,6 +45,10 @@ jobs:
             python-version: 3.8
             mpi: y
             omp: y
+          - libmesh: y
+            python-version: 3.8
+            mpi: y
+            omp: y
           - event: y
             python-version: 3.8
             omp: y
@@ -63,6 +68,7 @@ jobs:
       DAGMC: ${{ matrix.dagmc }}
       EVENT: ${{ matrix.event }}
       VECTFIT: ${{ matrix.vectfit }}
+      LIBMESH: ${{ matrix.libmesh }}
 
     steps:
       -
@@ -73,7 +79,11 @@ jobs:
         uses: actions/setup-python@v2
         with:
           python-version: ${{ matrix.python-version }}
-
+      -
+        name: Set up CMake
+        uses: jwlawson/actions-setup-cmake@v1.5
+        with:
+          cmake-version: 3.12.x
       -
         name: Environment Variables
         run: |
@@ -88,6 +98,8 @@ jobs:
           sudo apt -y update
           sudo apt install -y mpich \
                               libmpich-dev \
+                              libnetcdf-dev \
+                              libpnetcdf-dev \
                               libhdf5-serial-dev \
                               libhdf5-mpich-dev \
                               libeigen3-dev

tools/ci/gha-install-libmesh.sh

@@ -0,0 +1,24 @@
+
+#!/bin/bash
+set -ex
+
+CURRENT_DIR=$(pwd)
+
+# libMESH install
+# cd $HOME
+# mkdir LIBMESH && cd LIBMESH
+# git clone https://github.com/libmesh/libmesh -b v1.6.0 --recurse-submodules
+# mkdir build && cd build
+# ../libmesh/configure --prefix=$HOME/LIBMESH --enable-exodus --disable-mpi
+# make -j4 install
+# export LIBMESH_PC=$HOME/LIBMESH/lib/pkgconfig/
+# rm -rf $HOME/LIBMESH/build
+
+cd $HOME
+git clone https://github.com/idaholab/moose MOOSE
+cd MOOSE
+
+./scripts/update_and_rebuild_petsc.sh CXX=mpicxx CC=mpicc FC=mpifort
+./scripts/update_and_rebuild_libmesh.sh CXX=mpicxx CC=mpicc FC=mpifort
+
+cd $CURRENT_DIR

tools/ci/gha-install.py

@@ -51,7 +51,8 @@ def install(omp=False, mpi=False, phdf5=False, dagmc=False, libmesh=False):
 
     if libmesh:
         cmake_cmd.append('-Dlibmesh=ON')
-        cmake_cmd.append('-DCMAKE_PREFIX_PATH=/home/travis/LIBMESH')
+        libmesh_path = os.environ.get('HOME') + '/MOOSE/libmesh/installed'
+        cmake_cmd.append('-DCMAKE_PREFIX_PATH=' + libmesh_path)
 
     # Build in coverage mode for coverage testing
     cmake_cmd.append('-Dcoverage=on')

tools/ci/gha-install.sh

@@ -21,7 +21,7 @@ fi
 
 # Install libMesh if needed
 if [[ $LIBMESH = 'y' ]]; then
-    ./tools/ci/travis-install-libmesh.sh
+    ./tools/ci/gha-install-libmesh.sh
 fi
 
 # Install mpi4py for MPI configurations

tools/ci/travis-install-libmesh.sh

@@ -1,17 +0,0 @@
-
-#!/bin/bash
-set -ex
-
-CURRENT_DIR=$(pwd)
-
-# libMESH install
-cd $HOME
-mkdir LIBMESH && cd LIBMESH
-git clone https://github.com/libmesh/libmesh -b v1.6.0 --recurse-submodules
-mkdir build && cd build
-../libmesh/configure --prefix=$HOME/LIBMESH --enable-exodus --disable-mpi
-make -j4 install
-export LIBMESH_PC=$HOME/LIBMESH/lib/pkgconfig/
-rm -rf $HOME/LIBMESH/build
-
-cd $CURRENT_DIR