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Merge branch 'develop' into distribcell-paths

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Will Boyd 2016-05-01 13:47:15 -04:00
commit cc27630f7d
33 changed files with 418 additions and 349 deletions
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16
docs/source/pythonapi/examples/mgxs-part-i.ipynb
View file

@ -212,10 +212,9 @@
},
"outputs": [],
"source": [
"# Instantiate a Materials object, register all Materials, and export to XML\n",
"materials_file = openmc.Materials()\n",
"# Instantiate a Materials collection and export to XML\n",
"materials_file = openmc.Materials([inf_medium])\n",
"materials_file.default_xs = '71c'\n",
"materials_file.add_material(inf_medium)\n",
"materials_file.export_to_xml()"
]
},
@ -466,17 +465,14 @@
"tallies_file = openmc.Tallies()\n",
"\n",
"# Add total tallies to the tallies file\n",
"for tally in total.tallies.values():\n",
" tallies_file.add_tally(tally)\n",
"tallies_file += total.tallies.values()\n",
"\n",
"# Add absorption tallies to the tallies file\n",
"for tally in absorption.tallies.values():\n",
" tallies_file.add_tally(tally)\n",
"tallies_file += absorption.tallies.values()\n",
"\n",
"# Add scattering tallies to the tallies file\n",
"for tally in scattering.tallies.values():\n",
" tallies_file.add_tally(tally)\n",
" \n",
"tallies_file += scattering.tallies.values()\n",
"\n",
"# Export to \"tallies.xml\"\n",
"tallies_file.export_to_xml()"
]

9
docs/source/pythonapi/examples/mgxs-part-ii.ipynb
View file

@ -133,11 +133,8 @@
},
"outputs": [],
"source": [
"# Instantiate a Materials object, add Materials\n",
"materials_file = openmc.Materials()\n",
"materials_file.add_material(fuel)\n",
"materials_file.add_material(water)\n",
"materials_file.add_material(zircaloy)\n",
"# Instantiate a Materials collection\n",
"materials_file = openmc.Materials((fuel, water, zircaloy))\n",
"materials_file.default_xs = '71c'\n",
"\n",
"# Export to \"materials.xml\"\n",
@ -408,7 +405,7 @@
" \n",
" # Add OpenMC tallies to the tallies file for XML generation\n",
" for tally in xs_library[cell.id][rxn_type].tallies.values():\n",
" tallies_file.add_tally(tally, merge=True)\n",
" tallies_file.append(tally, merge=True)\n",
"\n",
"# Export to \"tallies.xml\"\n",
"tallies_file.export_to_xml()"

15
docs/source/pythonapi/examples/mgxs-part-iii.ipynb
View file

@ -133,11 +133,8 @@
},
"outputs": [],
"source": [
"# Instantiate a Materials object, add Materials\n",
"materials_file = openmc.Materials()\n",
"materials_file.add_material(fuel)\n",
"materials_file.add_material(water)\n",
"materials_file.add_material(zircaloy)\n",
"# Instantiate a Materials object\n",
"materials_file = openmc.Materials((fuel, water, zircaloy))\n",
"materials_file.default_xs = '71c'\n",
"\n",
"# Export to \"materials.xml\"\n",
@ -419,8 +416,7 @@
"plot.color = 'mat'\n",
"\n",
"# Instantiate a Plots object, add Plot, and export to \"plots.xml\"\n",
"plot_file = openmc.Plots()\n",
"plot_file.add_plot(plot)\n",
"plot_file = openmc.Plots([plot])\n",
"plot_file.export_to_xml()"
]
},
@ -685,9 +681,8 @@
"tally.filters = [mesh_filter]\n",
"tally.scores = ['fission', 'nu-fission']\n",
"\n",
"# Add mesh and tally to Tallies\n",
"tallies_file.add_mesh(mesh)\n",
"tallies_file.add_tally(tally)"
"# Add tally to collection\n",
"tallies_file.append(tally)"
]
},
{

19
docs/source/pythonapi/examples/pandas-dataframes.ipynb
View file

@ -108,11 +108,8 @@
},
"outputs": [],
"source": [
"# Instantiate a Materials object, add Materials\n",
"materials_file = openmc.Materials()\n",
"materials_file.add_material(fuel)\n",
"materials_file.add_material(water)\n",
"materials_file.add_material(zircaloy)\n",
"# Instantiate a Materials collection\n",
"materials_file = openmc.Materials((fuel, water, zircaloy))\n",
"materials_file.default_xs = '71c'\n",
"\n",
"# Export to \"materials.xml\"\n",
@ -329,9 +326,8 @@
"plot.pixels = [250, 250]\n",
"plot.color = 'mat'\n",
"\n",
"# Instantiate a Plots object, add Plot, and export to \"plots.xml\"\n",
"plot_file = openmc.Plots()\n",
"plot_file.add_plot(plot)\n",
"# Instantiate a Plots collection and export to \"plots.xml\"\n",
"plot_file = openmc.Plots([plot])\n",
"plot_file.export_to_xml()"
]
},
@ -449,8 +445,7 @@
"tally.scores = ['fission', 'nu-fission']\n",
"\n",
"# Add mesh and Tally to Tallies\n",
"tallies_file.add_mesh(mesh)\n",
"tallies_file.add_tally(tally)"
"tallies_file.append(tally)"
]
},
{
@ -478,7 +473,7 @@
"tally.nuclides = [u235, u238]\n",
"\n",
"# Add mesh and tally to Tallies\n",
"tallies_file.add_tally(tally)"
"tallies_file.append(tally)"
]
},
{
@ -510,7 +505,7 @@
"tally.triggers = [trigger]\n",
"\n",
"# Add mesh and tally to Tallies\n",
"tallies_file.add_tally(tally)"
"tallies_file.append(tally)"
]
},
{

17
docs/source/pythonapi/examples/post-processing.ipynb
View file

@ -104,11 +104,8 @@
},
"outputs": [],
"source": [
"# Instantiate a Materials object, add Materials\n",
"materials_file = openmc.Materials()\n",
"materials_file.add_material(fuel)\n",
"materials_file.add_material(water)\n",
"materials_file.add_material(zircaloy)\n",
"# Instantiate a Materials collection\n",
"materials_file = openmc.Materials((fuel, water, zircaloy))\n",
"materials_file.default_xs = '71c'\n",
"\n",
"# Export to \"materials.xml\"\n",
@ -298,9 +295,8 @@
"plot.pixels = [250, 250]\n",
"plot.color = 'mat'\n",
"\n",
"# Instantiate a Plots object, add Plot, and export to \"plots.xml\"\n",
"plot_file = openmc.Plots()\n",
"plot_file.add_plot(plot)\n",
"# Instantiate a Plots collection and export to \"plots.xml\"\n",
"plot_file = openmc.Plots([plot])\n",
"plot_file.export_to_xml()"
]
},
@ -393,17 +389,16 @@
"mesh.dimension = [100, 100]\n",
"mesh.lower_left = [-0.63, -0.63]\n",
"mesh.upper_right = [0.63, 0.63]\n",
"tallies_file.add_mesh(mesh)\n",
"\n",
"# Create mesh filter for tally\n",
"mesh_filter = openmc.Filter(type='mesh', bins=[1])\n",
"mesh_filter = openmc.Filter(type='mesh')\n",
"mesh_filter.mesh = mesh\n",
"\n",
"# Create mesh tally to score flux and fission rate\n",
"tally = openmc.Tally(name='flux')\n",
"tally.filters = [mesh_filter]\n",
"tally.scores = ['flux', 'fission']\n",
"tallies_file.add_tally(tally)"
"tallies_file.append(tally)"
]
},
{

93
docs/source/pythonapi/examples/tally-arithmetic.ipynb
View file

@ -15,16 +15,7 @@
"metadata": {
"collapsed": false
},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"The autoreload extension is already loaded. To reload it, use:\n",
" %reload_ext autoreload\n"
]
}
],
"outputs": [],
"source": [
"%load_ext autoreload\n",
"%autoreload 2"
@ -126,11 +117,8 @@
},
"outputs": [],
"source": [
"# Instantiate a Materials object, add Materials\n",
"materials_file = openmc.Materials()\n",
"materials_file.add_material(fuel)\n",
"materials_file.add_material(water)\n",
"materials_file.add_material(zircaloy)\n",
"# Instantiate a Materials collection\n",
"materials_file = openmc.Materials((fuel, water, zircaloy))\n",
"materials_file.default_xs = '71c'\n",
"\n",
"# Export to \"materials.xml\"\n",
@ -321,9 +309,8 @@
"plot.pixels = [250, 250]\n",
"plot.color = 'mat'\n",
"\n",
"# Instantiate a Plots object, add Plot, and export to \"plots.xml\"\n",
"plot_file = openmc.Plots()\n",
"plot_file.add_plot(plot)\n",
"# Instantiate a Plots collection and export to \"plots.xml\"\n",
"plot_file = openmc.Plots([plot])\n",
"plot_file.export_to_xml()"
]
},
@ -366,7 +353,7 @@
"outputs": [
{
"data": {
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"image/png": "iVBORw0KGgoAAAANSUhEUgAAAPoAAAD6AgMAAAD1grKuAAAABGdBTUEAALGPC/xhBQAAACBjSFJN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\nfTFU5QAAAABJRU5ErkJggg==\n",
"text/plain": [
"<IPython.core.display.Image object>"
]
@ -421,7 +408,7 @@
"tally.filters = [openmc.Filter(type='cell', bins=[fuel_cell.id, moderator_cell.id])]\n",
"tally.filters.append(energy_filter)\n",
"tally.scores = ['flux']\n",
"tallies_file.add_tally(tally)\n",
"tallies_file.append(tally)\n",
"\n",
"# Instantiate reaction rate Tally in fuel\n",
"tally = openmc.Tally(name='fuel rxn rates')\n",
@ -429,7 +416,7 @@
"tally.filters.append(energy_filter)\n",
"tally.scores = ['nu-fission', 'scatter']\n",
"tally.nuclides = [u238, u235]\n",
"tallies_file.add_tally(tally)\n",
"tallies_file.append(tally)\n",
"\n",
"# Instantiate reaction rate Tally in moderator\n",
"tally = openmc.Tally(name='moderator rxn rates')\n",
@ -437,7 +424,7 @@
"tally.filters.append(energy_filter)\n",
"tally.scores = ['absorption', 'total']\n",
"tally.nuclides = [o16, h1]\n",
"tallies_file.add_tally(tally)"
"tallies_file.append(tally)"
]
},
{
@ -453,8 +440,7 @@
"abs_rate = openmc.Tally(name='abs. rate')\n",
"fiss_rate.scores = ['nu-fission']\n",
"abs_rate.scores = ['absorption']\n",
"tallies_file.add_tally(fiss_rate)\n",
"tallies_file.add_tally(abs_rate)"
"tallies_file += (fiss_rate, abs_rate)"
]
},
{
@ -469,7 +455,7 @@
"therm_abs_rate = openmc.Tally(name='therm. abs. rate')\n",
"therm_abs_rate.scores = ['absorption']\n",
"therm_abs_rate.filters = [openmc.Filter(type='energy', bins=[0., 0.625e-6])]\n",
"tallies_file.add_tally(therm_abs_rate)"
"tallies_file.append(therm_abs_rate)"
]
},
{
@ -485,7 +471,7 @@
"fuel_therm_abs_rate.scores = ['absorption']\n",
"fuel_therm_abs_rate.filters = [openmc.Filter(type='energy', bins=[0., 0.625e-6]),\n",
" openmc.Filter(type='cell', bins=[fuel_cell.id])]\n",
"tallies_file.add_tally(fuel_therm_abs_rate)"
"tallies_file.append(fuel_therm_abs_rate)"
]
},
{
@ -500,7 +486,7 @@
"therm_fiss_rate = openmc.Tally(name='therm. fiss. rate')\n",
"therm_fiss_rate.scores = ['nu-fission']\n",
"therm_fiss_rate.filters = [openmc.Filter(type='energy', bins=[0., 0.625e-6])]\n",
"tallies_file.add_tally(therm_fiss_rate)"
"tallies_file.append(therm_fiss_rate)"
]
},
{
@ -520,7 +506,7 @@
"tally.filters.append(energy_filter)\n",
"tally.scores = ['nu-fission', 'scatter']\n",
"tally.nuclides = [h1, u238]\n",
"tallies_file.add_tally(tally)"
"tallies_file.append(tally)"
]
},
{
@ -567,12 +553,11 @@
" 888\n",
" 888\n",
"\n",
" Copyright: 2011-2015 Massachusetts Institute of Technology\n",
" License: http://mit-crpg.github.io/openmc/license.html\n",
" Copyright: 2011-2016 Massachusetts Institute of Technology\n",
" License: http://openmc.readthedocs.org/en/latest/license.html\n",
" Version: 0.7.1\n",
" Git SHA1: eeb5091ca3a34cc85df73a3318cae2b6c7097413\n",
" Date/Time: 2016-04-13 11:39:14\n",
" MPI Processes: 1\n",
" Git SHA1: ae083cf5d491e6a778d5b762dad19c8d5fe45238\n",
" Date/Time: 2016-04-30 06:37:41\n",
"\n",
" ===========================================================================\n",
" ========================> INITIALIZATION <=========================\n",
@ -628,20 +613,20 @@
"\n",
" =======================> TIMING STATISTICS <=======================\n",
"\n",
" Total time for initialization = 4.0300E-01 seconds\n",
" Reading cross sections = 8.6000E-02 seconds\n",
" Total time in simulation = 1.4439E+01 seconds\n",
" Time in transport only = 1.4430E+01 seconds\n",
" Time in inactive batches = 2.2790E+00 seconds\n",
" Time in active batches = 1.2160E+01 seconds\n",
" Time synchronizing fission bank = 2.0000E-03 seconds\n",
" Total time for initialization = 7.0900E-01 seconds\n",
" Reading cross sections = 4.0400E-01 seconds\n",
" Total time in simulation = 1.7108E+01 seconds\n",
" Time in transport only = 1.7093E+01 seconds\n",
" Time in inactive batches = 3.3970E+00 seconds\n",
" Time in active batches = 1.3711E+01 seconds\n",
" Time synchronizing fission bank = 1.0000E-03 seconds\n",
" Sampling source sites = 1.0000E-03 seconds\n",
" SEND/RECV source sites = 1.0000E-03 seconds\n",
" SEND/RECV source sites = 0.0000E+00 seconds\n",
" Time accumulating tallies = 0.0000E+00 seconds\n",
" Total time for finalization = 1.0000E-03 seconds\n",
" Total time elapsed = 1.4856E+01 seconds\n",
" Calculation Rate (inactive) = 5484.86 neutrons/second\n",
" Calculation Rate (active) = 3083.88 neutrons/second\n",
" Total time elapsed = 1.7835E+01 seconds\n",
" Calculation Rate (inactive) = 3679.72 neutrons/second\n",
" Calculation Rate (active) = 2735.03 neutrons/second\n",
"\n",
" ============================> RESULTS <============================\n",
"\n",
@ -815,7 +800,7 @@
" <tbody>\n",
" <tr>\n",
" <th>0</th>\n",
" <td>0</td>\n",
" <td>0.0</td>\n",
" <td>6.250000e-07</td>\n",
" <td>total</td>\n",
" <td>absorption</td>\n",
@ -877,7 +862,7 @@
" <tbody>\n",
" <tr>\n",
" <th>0</th>\n",
" <td>0</td>\n",
" <td>0.0</td>\n",
" <td>6.250000e-07</td>\n",
" <td>total</td>\n",
" <td>nu-fission</td>\n",
@ -941,7 +926,7 @@
" <tbody>\n",
" <tr>\n",
" <th>0</th>\n",
" <td>0</td>\n",
" <td>0.0</td>\n",
" <td>6.250000e-07</td>\n",
" <td>10000</td>\n",
" <td>total</td>\n",
@ -1007,7 +992,7 @@
" <tbody>\n",
" <tr>\n",
" <th>0</th>\n",
" <td>0</td>\n",
" <td>0.0</td>\n",
" <td>6.250000e-07</td>\n",
" <td>10000</td>\n",
" <td>total</td>\n",
@ -1072,7 +1057,7 @@
" <tbody>\n",
" <tr>\n",
" <th>0</th>\n",
" <td>0</td>\n",
" <td>0.0</td>\n",
" <td>6.250000e-07</td>\n",
" <td>10000</td>\n",
" <td>total</td>\n",
@ -1615,21 +1600,21 @@
],
"metadata": {
"kernelspec": {
"display_name": "Python 2",
"display_name": "Python 3",
"language": "python",
"name": "python2"
"name": "python3"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 2
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython2",
"version": "2.7.6"
"pygments_lexer": "ipython3",
"version": "3.5.1"
}
},
"nbformat": 4,

28
docs/source/pythonapi/index.rst
View file

@ -13,6 +13,20 @@ online. We recommend going through the modules from Codecademy_ and/or the
`Scipy lectures`_. The full API documentation serves to provide more information
on a given module or class.
-------------------------
Example Jupyter Notebooks
-------------------------
.. toctree::
:maxdepth: 1
examples/post-processing
examples/pandas-dataframes
examples/tally-arithmetic
examples/mgxs-part-i
examples/mgxs-part-ii
examples/mgxs-part-iii
------------------------------------
:mod:`openmc` -- Basic Functionality
------------------------------------
@ -271,20 +285,6 @@ Multi-group Cross Section Libraries
openmc.mgxs.Library
-------------------------
Example Jupyter Notebooks
-------------------------
.. toctree::
:maxdepth: 1
examples/post-processing
examples/pandas-dataframes
examples/tally-arithmetic
examples/mgxs-part-i
examples/mgxs-part-ii
examples/mgxs-part-iii
.. _Jupyter: https://jupyter.org/
.. _NumPy: http://www.numpy.org/
.. _Codecademy: https://www.codecademy.com/tracks/python