Addressing @promano's comments.

This commit is contained in:
Patrick Shriwise 2019-03-12 11:39:04 -05:00
parent 263f70642c
commit e7b3175da1
4 changed files with 49 additions and 95 deletions

View file

@ -70,7 +70,7 @@ extern "C" {
int openmc_next_batch(int* status);
int openmc_nuclide_name(int index, const char** name);
int openmc_plot_geometry();
int openmc_id_map(void* slice, int32_t *data_out);
int openmc_id_map(const void* slice, int32_t *data_out);
int openmc_reset();
int openmc_run();
void openmc_set_seed(int64_t new_seed);

View file

@ -23,46 +23,11 @@ class _Position(Structure):
('y', c_double),
('z', c_double)]
def __init__(self, vals=None):
if vals:
x = vals[0]
y = vals[1]
z = vals[2]
else:
x = 0.0
y = 0.0
z = 0.0
@property
def x(self):
return self.x
@property
def y(self):
return self.y
@property
def z(self):
return self.z
@x.setter
def x(self, x_val):
assert(isinstance(x_val, float))
self.x = x_val
@y.setter
def y(self, y_val):
assert(isinstance(y_val, float))
self.y = y_val
@z.setter
def z(self, z_val):
assert(isinstance(z_val, float))
self.z = z_val
def __repr__(self):
return "({}, {}, {})".format(self.x, self.y, self.z)
def __str__(self):
return "Position: ({}, {}, {})".format(self.x, self.y, self.z)
return self.__repr__()
class _PlotBase(Structure):
"""A structure defining a 2-D geometry slice with underlying c-types
@ -91,9 +56,9 @@ class _PlotBase(Structure):
basis : string
One of {'xy', 'xz', 'yz'} indicating the horizontal and vertical
axes of the plot.
hRes : float
h_res : float
The horizontal resolution of the plot in pixels
vRes : float
v_res : float
The vertical resolution of the plot in pixels
level : int
The universe level for the plot (default: -1 -> all universes shown)
@ -132,11 +97,11 @@ class _PlotBase(Structure):
raise ValueError("Plot basis {} is invalid".format(basis_))
@property
def hRes(self):
def h_res(self):
return self.pixels_[0]
@property
def vRes(self):
def v_res(self):
return self.pixels_[1]
@property
@ -183,30 +148,30 @@ class _PlotBase(Structure):
raise ValueError("{} of type {} is an"
" invalid plot basis".format(basis, type(basis)))
@hRes.setter
def hRes(self, hRes):
self.pixels_[0] = hRes
@h_res.setter
def h_res(self, h_res):
self.pixels_[0] = h_res
@vRes.setter
def vRes(self, vRes):
self.pixels_[1] = vRes
@v_res.setter
def v_res(self, v_res):
self.pixels_[1] = v_res
@level.setter
def level(self, level):
self.level_ = level
def __repr__(self):
out_str = "-----\n"
out_str += "Plot:\n"
out_str += "-----\n"
out_str += "Origin: {}\n".format(self.origin)
out_str += "Width: {}\n".format(self.width)
out_str += "Height: {}\n".format(self.height)
out_str += "Basis: {}\n".format(self.basis)
out_str += "HRes: {}\n".format(self.hRes)
out_str += "VRes: {}\n".format(self.vRes)
out_str += "Level: {}\n".format(self.level)
return out_str
out_str = ["-----",
"Plot:",
"-----",
"Origin: {}".format(self.origin),
"Width: {}".format(self.width),
"Height: {}".format(self.height),
"Basis: {}".format(self.basis),
"HRes: {}".format(self.h_res),
"VRes: {}".format(self.v_res),
"Level: {}".format(self.level)]
return '\n'.join(output)
def __str__(self):
return self.__repr__()
@ -220,20 +185,21 @@ _dll.openmc_id_map.errcheck = _error_handler
def id_map(plot):
"""
Generate a 2-D map of (cell_id, material_id). Used for in-memory image
generation.
generation.
Parameters
----------
plot : An openmc.capi.plot._PlotBase object describing the slice of the
model to be generated
plot : An openmc.capi.plot._PlotBase
Object describing the slice of the model to be generated
Returns
-------
id_map : a NumPy array with shape (vertical pixels, horizontal pixels, 2)
of OpenMC property ids with dtype int32
id_map : numpy.ndarray
A NumPy array with shape (vertical pixels, horizontal pixels, 2) of
OpenMC property ids with dtype int32
"""
img_data = np.zeros((plot.vRes, plot.hRes, 2),
img_data = np.zeros((plot.v_res, plot.h_res, 2),
dtype=np.dtype('int32'))
_dll.openmc_id_map(POINTER(_PlotBase)(plot),
img_data.ctypes.data_as(POINTER(c_int32)))

View file

@ -619,8 +619,8 @@ Plot::set_mask(pugi::xml_node plot_node)
}
Plot::Plot(pugi::xml_node plot_node)
: index_meshlines_mesh_{-1}
{
index_meshlines_mesh_ = -1;
set_id(plot_node);
set_type(plot_node);
set_output_path(plot_node);
@ -952,9 +952,9 @@ RGBColor random_color() {
return {int(prn()*255), int(prn()*255), int(prn()*255)};
}
extern "C" int openmc_id_map(void* plot, int32_t* data_out) {
extern "C" int openmc_id_map(const void* plot, int32_t* data_out) {
auto plt = reinterpret_cast<PlotBase*>(plot);
auto plt = reinterpret_cast<const PlotBase*>(plot);
if (!plt) {
set_errmsg("Invalid slice pointer passed to openmc_id_map");
return OPENMC_E_INVALID_ARGUMENT;
@ -968,38 +968,32 @@ extern "C" int openmc_id_map(void* plot, int32_t* data_out) {
double out_pixel = (plt->width_[1])/static_cast<double>(height);
// size data array
IdData data;
data.resize({height, width, 2});
IdData data({height, width, 2}, NOT_FOUND);
// setup basis indices and initial position centered on pixel
int in_i, out_i;
double xyz[3];
Position xyz = plt->origin_;
switch(plt->basis_) {
case PlotBasis::xy :
in_i = 0;
out_i = 1;
xyz[0] = plt->origin_[0] - plt->width_[0] / 2. + in_pixel / 2.;
xyz[1] = plt->origin_[1] + plt->width_[1] / 2. - out_pixel / 2.;
xyz[2] = plt->origin_[2];
break;
case PlotBasis::xz :
in_i = 0;
out_i = 2;
xyz[0] = plt->origin_[0] - plt->width_[0] / 2. + in_pixel / 2.;
xyz[1] = plt->origin_[1];
xyz[2] = plt->origin_[2] + plt->width_[1] / 2. - out_pixel / 2.;
break;
case PlotBasis::yz :
in_i = 1;
out_i = 2;
xyz[0] = plt->origin_[0];
xyz[1] = plt->origin_[1] - plt->width_[0] / 2. + in_pixel / 2.;
xyz[2] = plt->origin_[2] + plt->width_[1] / 2. - out_pixel / 2.;
break;
}
// set initial position
xyz[in_i] = plt->origin_[in_i] - plt->width_[0] / 2. + in_pixel / 2.;
xyz[out_i] = plt->origin_[out_i] + plt->width_[1] / 2. - out_pixel / 2.;
// arbitrary direction
double dir[3] = {0.5, 0.5, 0.5};
Direction dir = {0.5, 0.5, 0.5};
#pragma omp parallel
{
@ -1010,7 +1004,7 @@ extern "C" int openmc_id_map(void* plot, int32_t* data_out) {
int level = plt->level_;
int j{};
#pragma omp for
#pragma omp for
for (int y = 0; y < height; y++) {
p.r()[out_i] = xyz[out_i] - out_pixel * y;
for (int x = 0; x < width; x++) {
@ -1020,15 +1014,10 @@ extern "C" int openmc_id_map(void* plot, int32_t* data_out) {
bool found_cell = find_cell(&p, 0);
j = p.n_coord_ - 1;
if (level >=0) {j = level + 1;}
if (!found_cell) {
data(y,x,0) = NOT_FOUND;
data(y,x,1) = NOT_FOUND;
} else {
Cell *c = model::cells[p.coord_[j].cell].get();
if (found_cell) {
Cell* c = model::cells[p.coord_[j].cell].get();
data(y,x,0) = c->id_;
if (c->type_ == FILL_UNIVERSE || p.material_ == MATERIAL_VOID) {
data(y,x,1) = NOT_FOUND;
} else {
if (c->type_ != FILL_UNIVERSE && p.material_ != MATERIAL_VOID) {
data(y,x,1) = model::materials[p.material_]->id_;
}
}
@ -1037,8 +1026,7 @@ extern "C" int openmc_id_map(void* plot, int32_t* data_out) {
} // omp parallel
// write id data to array
size_t i = 0;
for (auto v : data) { data_out[i++] = v; }
std::copy(data.begin(), data.end(), data_out);
return 0;
}

View file

@ -411,8 +411,8 @@ def test_id_map(capi_init):
s = openmc.capi.plot._PlotBase()
s.width = 1.26
s.height = 1.26
s.vRes = 3
s.hRes = 3
s.v_res = 3
s.h_res = 3
s.origin = (0.0, 0.0, 0.0)
s.basis = 'xy'
s.level = -1