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moved voxel plot to api accessible function
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commit
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3 changed files with 146 additions and 63 deletions
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@ -2,63 +2,7 @@
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from argparse import ArgumentParser
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import h5py
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import vtk
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_min_version = (2, 0)
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def voxel_to_vtk(voxel_file: str, output: str):
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# Read data from voxel file
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fh = h5py.File(voxel_file, "r")
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# check version
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version = tuple(fh.attrs["version"])
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if version < _min_version:
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old_version = ".".join(map(str, version))
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min_version = ".".join(map(str, _min_version))
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err_msg = (
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"This voxel file's version is {}. This script "
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"only supports voxel files with version {} or "
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"higher. Please generate a new voxel file using "
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"a newer version of OpenMC.".format(old_version, min_version)
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)
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raise ValueError(err_msg)
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dimension = fh.attrs["num_voxels"]
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width = fh.attrs["voxel_width"]
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lower_left = fh.attrs["lower_left"]
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nx, ny, nz = dimension
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grid = vtk.vtkImageData()
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grid.SetDimensions(nx + 1, ny + 1, nz + 1)
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grid.SetOrigin(*lower_left)
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grid.SetSpacing(*width)
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# transpose data from OpenMC ordering (zyx) to VTK ordering (xyz)
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# and flatten to 1-D array
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print("Reading and translating data...")
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h5data = fh["data"][...]
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data = vtk.vtkIntArray()
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data.SetName("id")
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# set the array using the h5data array
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data.SetArray(h5data, h5data.size, True)
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# add data to image grid
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grid.GetCellData().AddArray(data)
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writer = vtk.vtkXMLImageDataWriter()
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if vtk.vtkVersion.GetVTKMajorVersion() > 5:
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writer.SetInputData(grid)
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else:
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writer.SetInput(grid)
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if not output.endswith(".vti"):
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output += ".vti"
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writer.SetFileName(output)
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print("Writing VTK file {}...".format(output))
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writer.Write()
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import openmc
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if __name__ == "__main__":
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@ -73,4 +17,6 @@ if __name__ == "__main__":
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help="Path to output VTK file.",
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)
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args = parser.parse_args()
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voxel_to_vtk(args.voxel_file, args.output)
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print("Reading and translating data...")
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openmc.plots._voxel_to_vtk(args.voxel_file, args.output)
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print(f"Written VTK file {args.output}...")
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