5318 commits

Author	SHA1	Message	Date
Paul Romano	43fdeb41a1	Make sure std_dev is calculated if mean is negative. Don't set nuclides in ... link_with_summary. Update pandas-dataframe notebook.	2015-09-21 10:01:26 +07:00
Paul Romano	b0ea5b8ae0	Fix handling of mesh type	2015-09-21 10:00:51 +07:00
Paul Romano	da2bc6b6fe	Write tally nuclides as array of strings for HDF5 files	2015-09-20 14:04:38 +07:00
Paul Romano	8753f23059	Change StructuredMesh to RegularMesh. Write type as 'regular'.	2015-09-20 14:04:34 +07:00
Paul Romano	36a2217487	Write cell surface specification with user ids in summary.h5	2015-09-20 13:55:19 +07:00
Paul Romano	9a0acdebc3	Write constant values as strings in HDF5 formats. This includes things like the ... run mode, tally estimator, filter type, tally scores, etc. Also do not write nuclides in summary file.	2015-09-20 13:55:15 +07:00
Paul Romano	629e3b2156	Merge pull request #457 from smharper/pyapi_assume_coeff ... Assume unspecified surface coeffs = 0 in PyAPI	2015-09-19 12:11:25 +07:00
Sterling Harper	40d38df244	Assume unspecified surface coeffs = 0 in PyAPI	2015-09-19 00:20:27 -04:00
Paul Romano	bcbb8f6a3f	Merge branch 'develop' into output-improvements ... Conflicts: openmc/statepoint.py	2015-09-19 10:28:47 +07:00
Paul Romano	cb3d79a1af	Added summary file format in documentation. sab_names now array of strings.	2015-09-19 10:10:19 +07:00
Paul Romano	c57b2c22d9	Minor fix in StatePoint.std_dev property and plot-mesh-tally script	2015-09-18 22:05:50 +07:00
Sterling Harper	ca0f43bce0	Merge remote-tracking branch 'upstream/develop' into collision_estimator	2015-09-17 15:51:33 -04:00
Paul Romano	3df61825cc	Make filetype a string in HDF5 files.	2015-09-17 13:12:04 +07:00
Paul Romano	8b67fa7a92	Use structured array for global tallies with mean and std_dev fields	2015-09-17 07:21:04 +07:00
Sterling Harper	9ced99197b	Add collision estimator to PyAPI	2015-09-16 18:04:44 -04:00
Paul Romano	c99c1f1870	Fix bug with source_present	2015-09-16 18:48:28 +07:00
Paul Romano	9bd1dc0cb9	Get rid of SourceSite class and just use ndarray with compound datatype	2015-09-16 18:37:05 +07:00
Paul Romano	97a7582c44	Determine Tally.sum, sum_sq, mean, std_dev on demand. No more read_results()!	2015-09-16 18:37:02 +07:00
Adam Nelson	9dd810e7b6	Merged w/ upstream	2015-09-16 07:21:02 -04:00
Paul Romano	aac5eb6f52	Restructure openmc.particle_restart to read values on demand	2015-09-16 15:45:33 +07:00
Paul Romano	2c4f7f113e	Restructured most of openmc.statepoint.StatePoint to read values on demand from ... properties.	2015-09-16 15:45:30 +07:00
Paul Romano	4bf34de6f7	Write moment orders as an array of strings in statepoint files	2015-09-16 13:54:00 +07:00
Paul Romano	8b877960a7	Read/write strings in hdf5_interface as C null-terminated strings.	2015-09-16 07:10:36 +07:00
Will Boyd	7e4e2c4367	Merge branch 'develop' into mgxs	2015-09-15 09:35:38 -04:00
Will Boyd	3eee7a7301	Hotfix for translations, rotations in Summary Python API	2015-09-15 00:05:55 -04:00
Will Boyd	73e75f26a5	Fixed merge conflicts with develop	2015-09-15 00:05:07 -04:00
Will Boyd	031973a89f	Merge pull request #451 from smharper/filter_isinstance ... Numpy-aware isinstance in filter.py	2015-09-14 21:14:42 -04:00
Sterling Harper	ba659b3f0c	Fix PyAPI filter for numpy isinstance bug	2015-09-14 20:45:21 -04:00
Will Boyd	1679a5c60c	Merge branch 'hdf5-summary-hotfix' into mgxs	2015-09-14 17:50:39 -04:00
Will Boyd	61ed62b8cf	Hotfix for Python summary API resulting from changes made in f8bfa401cb	2015-09-14 17:47:52 -04:00
Will Boyd	b5cbc8399e	Merge branch 'develop' into mgxs	2015-09-14 16:50:40 -04:00
Will Boyd	e40716a49b	Began cleanup of Tally.summation(...) routine in Python API	2015-09-13 20:16:07 -04:00
Will Boyd	ec497c526a	Improved docstrings for MultiGroupXS	2015-09-13 17:29:17 -04:00
Will Boyd	4657823ade	Added abstract compute_xs method to MultiGroupXS class in Python API	2015-09-13 17:24:09 -04:00
Will Boyd	2ad9ac9932	HDF5 stores now working for MultiGroupXS in Python API	2015-09-13 17:14:29 -04:00
Will Boyd	6d2a87fd35	Removed subdomain indices related methods and attributes from MultiGroupXS in Python API	2015-09-13 13:04:27 -04:00
Will Boyd	fa86ae2fbb	Removed references to Greek letters in MultiGroupXS latex generatoin	2015-09-13 12:51:53 -04:00
Will Boyd	442e0d88e9	Made Python API Filter.num_bins property decorator look at bins attribute for smarter return	2015-09-13 12:42:23 -04:00
Will Boyd	e663aa6ec8	Fixed mergeable tallies for use with MultiGroupXS subclasses in Python API	2015-09-13 12:25:31 -04:00
Will Boyd	ad981a6035	Fixed bug in subdomain-averaged multi-group cross-sections	2015-09-13 09:33:41 -04:00
Will Boyd	39040c587a	Pandas DataFrames for MultiGroupXS now swap energy bounds with group indices if needed	2015-09-13 09:28:49 -04:00
Will Boyd	67312eaf8f	MultiGroupXS pickle and unpickle routines now working	2015-09-13 01:43:30 -04:00
Will Boyd	925d227d1f	The print_xs routine for the Python API ScatterMatrixXS class is now working	2015-09-13 01:34:54 -04:00
Will Boyd	da6e953319	MultiGroupXS print_xs and get_xs routines now working	2015-09-13 01:14:38 -04:00
Will Boyd	ecda3bef5e	Subdomain-averaged multi-group cross-section calculation now working	2015-09-13 00:31:50 -04:00
Will Boyd	665b8226e8	Improvements to docstrings for openmc.mgxs.MultiGroupXS	2015-09-12 22:16:41 -04:00
Will Boyd	a886a16b04	Improved comments for Python API openmc.mgxs.EnergyGroups class	2015-09-12 21:36:19 -04:00
Will Boyd	d41f0a92e3	Fixed bug in bins property decorator for CrossFilter	2015-09-12 21:05:10 -04:00
Will Boyd	db6e07917f	Cleaned up tally arithmetic cross-product classes __init__, __hash__, __eq__ routines	2015-09-12 21:02:13 -04:00
Will Boyd	17317a7a31	Now using tally merging and slicing for openmc.mgxs	2015-09-12 02:31:25 -04:00