From df1f10aa3b2fb8acf2d265f662efe67c7f0c192b Mon Sep 17 00:00:00 2001
From: Adam Parler <adamparler@gmail.com>
Date: Tue, 31 Oct 2023 23:41:42 -0700
Subject: [PATCH] Updated README and scripts

---
 BEAVRS/run.sh |  7 +++++++
 README.md     |  4 ++++
 setup.sh      | 53 +++++++++++++++++++++++++++++++++++++++++++++------
 3 files changed, 58 insertions(+), 6 deletions(-)
 create mode 100755 BEAVRS/run.sh

diff --git a/BEAVRS/run.sh b/BEAVRS/run.sh
new file mode 100755
index 0000000..e267f21
--- /dev/null
+++ b/BEAVRS/run.sh
@@ -0,0 +1,7 @@
+#!/bin/bash
+
+conda activate openmc-env
+
+export OPENMC_CROSS_SECTIONS=${PWD}/cross_sections.xml
+export OMP_SCHEDULE=dynamic,1
+nohup python make_beavrs.py > stdout 2>&1 &
diff --git a/README.md b/README.md
index f98d4d7..0efac66 100644
--- a/README.md
+++ b/README.md
@@ -2,3 +2,7 @@
 This repository is amalgamation of various simulations I found interesting. They are joined together to make one giant simulation repo.
 
 Files have been updated to run with `v0.13.3` of [OpenMC](https://github.com/openmc-dev/openmc/tree/v0.13.3)
+
+## Prerequisites
+
+OpenMC, NumPy, Matplotlib, h5py
diff --git a/setup.sh b/setup.sh
index 5a13602..6e32bc1 100644
--- a/setup.sh
+++ b/setup.sh
@@ -5,22 +5,30 @@ BASE_DIR=/opt/
 ##### DOWNLOAD DATA #####
 mkdir -p $BASE_DIR/xdata && cd $BASE_DIR/xdata
 
-wget -O endfb71.tar.xz https://anl.box.com/shared/static/9igk353zpy8fn9ttvtrqgzvw1vtejoz6.xz
+wget -c -O endfb71.tar.xz https://anl.box.com/shared/static/9igk353zpy8fn9ttvtrqgzvw1vtejoz6.xz
 tar -xf endfb71.tar.xz
 
-wget -O endfb80.tar.xz https://anl.box.com/shared/static/uhbxlrx7hvxqw27psymfbhi7bx7s6u6a.xz
+wget -c -O endfb80.tar.xz https://anl.box.com/shared/static/uhbxlrx7hvxqw27psymfbhi7bx7s6u6a.xz
 tar -xf endfb80.tar.xz
 
-wget -O jeff33.tar.xz https://anl.box.com/shared/static/4jwkvrr9pxlruuihcrgti75zde6g7bum.xz
+wget -c -O jeff33.tar.xz https://anl.box.com/shared/static/4jwkvrr9pxlruuihcrgti75zde6g7bum.xz
 tar -xf jeff33.tar.xz
 
-wget -O lib80x.tar.xz https://anl.box.com/shared/static/nd7p4jherolkx4b1rfaw5uqp58nxtstr.xz
+wget -c -O lib80x.tar.xz https://anl.box.com/shared/static/nd7p4jherolkx4b1rfaw5uqp58nxtstr.xz
 tar -xf lib80x.tar.xz
 
-wget -O fendl32.tar.xz https://anl.box.com/shared/static/3cb7jetw7tmxaw6nvn77x6c578jnm2ey.xz
+wget -c -O fendl32.tar.xz https://anl.box.com/shared/static/3cb7jetw7tmxaw6nvn77x6c578jnm2ey.xz
 tar -xf fendl32.tar.xz
 
-git clone https://github.com/ahmedkmadani/OpenMCProject.git openmc-test
+wget -c -O endfb-vii.1-hdf5/chain_endfb71_pwr.xml https://anl.box.com/shared/static/os1u896bwsbopurpgas72bi6aij2zzdc.xml
+wget -c -O endfb-vii.1-hdf5/chain_endfb71_sfr.xml https://anl.box.com/shared/static/9058zje1gm0ekd93hja542su50pccvj0.xml
+
+wget -c -O endfb-viii.0-hdf5/chain_endfb80_pwr.xml  https://anl.box.com/shared/static/nyezmyuofd4eqt6wzd626lqth7wvpprr.xml
+wget -c -O endfb-viii.0-hdf5/chain_endfb80_sfr.xml https://anl.box.com/shared/static/x3kp739hr5upmeqpbwx9zk9ep04fnmtg.xml
+
+mkdir casl_deplete
+wget -c -O casl_deplete/chain_casl_pwr.xml https://anl.box.com/shared/static/3nvnasacm2b56716oh5hyndxdyauh5gs.xml
+wget -c -O casl_deplete/chain_casl_sfr.xml https://anl.box.com/shared/static/9fqbq87j0tx4m6vfl06pl4ccc0hwamg9.xml
 
 #########################
 
@@ -42,3 +50,36 @@ python --version
 ##     to the top of any Notebook files you use
 
 openmc -g -n 1000000 -s 32 -t -e problem
+
+
+
+########## INSTALL OPENMC FROM SOURCE ################
+
+module load gcc/8.1.0 openmpi/4.1.4 cmake/3.26.3 git/2.42.0 python/3.11.5
+
+git clone --recurse-submodules https://github.com/openmc-dev/openmc.git
+
+cd openmc
+git checkout v0.13.3
+
+mkdir build && cd build
+
+HDF5_ROOT=/share/apps/hdf5-withmpi/gcc/8.1.0/openmpi/4.1.4 \
+cmake .. -DOPENMC_USE_OPENMP=on -DOPENMC_USE_MPI=on -DHDF5_PREFER_PARALLEL=on \
+-DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=$HOME/openmc
+
+make -j24
+make -j24 install
+
+cd ..
+MPICC=${MPI_ROOT}/bin/mpicc pip3 install mpi4py
+
+CC=/share/apps/openmpi/4.1.4/gcc/8.1.0/bin/mpicc HDF5_MPI=ON \
+HDF5_DIR=/share/apps/hdf5-withmpi/gcc/8.1.0/openmpi/4.1.4 \
+pip3 install --no-binary=h5py h5py
+
+PATH=${HOME}/openmc/bin:${PATH}
+PATH=${PATH}/.local/bin:${PATH}
+export PATH
+
+pip3 install .