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| .. | ||
| README | ||
| small.nw | ||
| small.pdb | ||
| small_am.cor | ||
| small_am.in | ||
| small_am.top | ||
This is an ALA dimer NWChem input files: small.nw - nwchem job file small.pdb - geometry as a PDB file, used by small.nw NWChem output file: small_energy.out small_md.out small.top small.seq small.out small.nam small_md.rst small_md.qrs small_md.cmd small.db small.bsg Amber input files: small_am.in - amber job file small_am.cor - amber coordinate file small_am.top - amber topology file Amber output files: small_am.out small_am.rst mdinfo Results from *.out files: -1.374134919E+02 kJ/mol for single point NWChem (-3.2843E+01 kcal/mol) -1.83007E+02 kJ/mol for 500 steps NWChem (-4.3740E+01 kcal/mol) -1.90732E+02 kj/mol for 7000 steps NWChem (-4.5586E+01 kcal/mol) -3.2847E+01 kcal/mol for single point Amber -4.5025E+01 kcal/mol for 500 steps Amber -4.5867E+01 kcal/mol for 7000 steps Amber Note that the initial and optimized energies match well