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399 lines
8.1 KiB
Markdown
399 lines
8.1 KiB
Markdown
# Acronyms
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```{glossary}
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ADMM
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Auxiliary Density Matrix Method [→ more](methods/dft/hartree-fock/admm)
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ALMO
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Absolutely Localized Molecular Orbitals
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AM1
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Austin Model 1 [→ more](methods/semiempiricals/index)
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AMBER
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Assisted Model Building and Energy Refinement
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APT
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Atomic Polarization Tensor
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ASE
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Atomic Simulation Environment
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ASPC
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Always Stable Predictor-Corrector [→ more](methods/sampling/molecular_dynamics)
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BCC
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Body-Centered Cubic crystal structure
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BFGS
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Broyden–Fletcher–Goldfarb–Shanno algorithm [→ more](methods/optimization/geometry_and_cell_opt)
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BOMD
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Born-Oppenheimer Molecular Dynamics [→ more](methods/sampling/molecular_dynamics)
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BSE
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Bethe-Salpeter Equation [→ more](methods/properties/optical/bethe-salpeter)
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BSSE
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Basis Set Superposition Error [→ more](methods/dft/basis_sets)
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CDFT
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Constrained Density Functional Theory [→ more](methods/dft/constrained)
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CDFT-CI
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Constrained Density Functional Theory Configuration Interaction [→ more](methods/dft/constrained)
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CG
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Conjugated Gradients algorithm [→ more](methods/optimization/geometry_and_cell_opt)
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CHARMM
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Chemistry at HARvard Molecular Mechanics
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CIF
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Crystallographic Information File
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COLVAR
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COLlective VARiable [→ more](methods/sampling/metadynamics)
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CP
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Car-Parrinello method
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CPMD
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Car-Parrinello Molecular Dynamics
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CSVR
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Canonical Sampling through Velocity Rescaling
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CUDA
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Compute Unified Device Architecture
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DBCSR
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Distributed Block Compressed Sparse Row library
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DDAPC
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Density Derived Atomic Point Charges
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DFTB
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Density Functional Tight Binding [→ more](methods/semiempiricals/dftb)
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DFT
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Density Functional Theory [→ more](methods/dft/index)
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DFET
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Density Functional Embedding Theory [→ more](methods/embedding/qm_qm)
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DIIS
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Direct Inversion of the Iterative Subspace [→ more](methods/dft/index)
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DLA-F
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Distributed Linear Algebra from the Future [→ more](technologies/eigensolvers/dlaf)
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DOS
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Density Of States [→ more](methods/electronic_structure/dos)
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EAM
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Embedded-Atom Method
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EC
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Energy Correction
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EHT
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Extended Hückel Theory
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EIP
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Empirical Interatomic Potential [→ more](methods/semiempiricals/index)
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ELPA
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Eigenvalue soLvers for Petascale Applications [→ more](technologies/eigensolvers/elpa)
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EMD
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Ehrenfest Molecular Dynamics [→ more](methods/sampling/ehrenfest)
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EPR
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Electron Paramagnetic Resonance
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ERI
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Electron Repulsion Integral [→ more](methods/dft/hartree-fock/index)
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FCC
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Face-Centered Cubic crystal structure
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FIST
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Frontiers In Simulation Technology (CP2K's force field implementation)
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FPGA
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Field Programmable Gate Array
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GAPW
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Gaussian Augmented-Plane Waves method [→ more](methods/dft/gapw)
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gCP
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Geometrical CounterPoise [→ more](#Kruse2012)
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GCP
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Google Cloud Platform [→ more](https://cloud.google.com)
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GEEP
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Gaussian Expansion of the Electrostatic Potential [→ more](methods/qm_mm/builtin)
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GGA
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Generalized Gradient Approximations [→ more](methods/dft/index)
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GHO
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Generalized Hybrid Orbital method
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GLE
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Generalized Langevin Equation thermostat
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GPW
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Gaussian Plane Wave method [→ more](methods/dft/gpw)
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GROMOS
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GROningen MOlecular Simulation
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GTH
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Goedecker-Teter-Hutter pseudopotentials
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GTO
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Gaussian Type Orbitals
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GW
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GW approximation [→ more](methods/properties/optical/index)
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HCP
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Hexagonal Close-Packed crystal structure
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HF
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Hartree Fock [→ more](methods/dft/hartree-fock/index)
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HFX
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Hartree Fock eXchange [→ more](methods/dft/hartree-fock/index)
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HIP
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Heterogeneous Interface for Portability
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IEEE
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Institute of Electrical and Electronics Engineers
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IMOMM
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Integrated Molecular Orbital Molecular Mechanics method
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K-point
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a vector in reciprocal space [→ more](methods/dft/k-points)
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KS
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Kohn-Sham [→ more](methods/dft/index)
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LCAO
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Linear Combination of Atomic Orbitals
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LDA
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Local-Density Approximation [→ more](methods/dft/index)
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LDOS
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Local Density of States.
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LINRES
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LINear RESponse
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LRIGPW
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Local Resolution-of-Identity Projector Augmented Wave method [→ more](methods/dft/local_ri)
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LS
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Linear Scaling [→ more](methods/dft/linear_scaling)
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LSD
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Local Spin Density
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MAO
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Modified Atomic Orbitals
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MC
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Monte Carlo method [→ more](methods/sampling/monte_carlo)
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MD
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Molecular Dynamics [→ more](methods/sampling/molecular_dynamics)
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MM
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Molecular Mechanics
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MME
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MiniMax-Ewald [→ more](methods/qm_mm/image_charges)
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MNDO
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Modified Neglect of Diatomic Overlap
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MO
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Molecular Orbitals [→ more](methods/electronic_structure/molecular_orbitals)
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MOM
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Maximum Overlap Method
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MP2
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Møller–Plesset perturbation theory to 2nd order [→ more](methods/post_hartree_fock/mp2)
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MPI
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Message Passing Interface
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MSST
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Multi-Scale Shock Technique
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NDDO
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Neglect of Diatomic Differential Overlap
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NEB
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Nudged Elastic Band [→ more](methods/optimization/nudged_elastic_band)
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NEGF
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Non-Equilibrium Green's Function [→ more](methods/electronic_structure/band/gw)
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NMR
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Nuclear Magnetic Resonance [→ more](methods/properties/nmr)
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NNP
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Neural Network Potential [→ more](methods/machine_learning/nnp)
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NpE
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Constant Number, Pressure, and Energy [→ more](methods/sampling/molecular_dynamics)
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NVE
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Constant Number, Volume, and Energy [→ more](methods/sampling/molecular_dynamics)
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NVT
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Constant Number, Volume, and Temperature [→ more](methods/sampling/molecular_dynamics)
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OF
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Orbital Free [→ more](methods/dft/index)
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OpenCL
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Open Computing Language
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OpenMP
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Open Multi-Processing
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OT
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Orbital Transformation method
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PAO-ML
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Polarized Atomic Orbitals from Machine Learning [→ more](methods/machine_learning/pao-ml)
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PBC
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Periodic Boundary Conditions
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PBE
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Perdew–Burke–Ernzerhof exchange-correlation functional [→ more](methods/dft/index)
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PDB
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Protein Data Bank (the database or the format specification)
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PIGLET
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Path Integral Generalized Langevin Equation Thermostat
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PILE
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Path Integral Langevin Equation thermostat
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PINT
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Path INTegral [→ more](methods/sampling/path_integrals)
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PM3
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Parameterized Model number 3 [→ more](methods/semiempiricals/index)
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PM6
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Parameterized Model number 6 [→ more](methods/semiempiricals/index)
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POD
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Projection-Operator Diabatization
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PP
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Pseudo-Potential [→ more](methods/dft/pseudopotentials)
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PW
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Plane Waves
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QMMM
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Quantum Mechanics / Molecular Mechanics [→ more](methods/qm_mm/index)
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QM
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Quantum Mechanics
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QS
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Quick Step (cp2k's quantum methods implementation) [→ more](methods/dft/gpw)
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RESP
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Restrained ElectroStatic Potential [→ more](methods/electronic_structure/population/resp)
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RESPA
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REversible reference System Propagator Algorithm
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RI
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Resolution of Identity
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RM1
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Recife Model 1
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RMA
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Remote Memory Access
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RMSD
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Root-Mean-Square Deviation
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RPA
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Random-Phase Approximation [→ more](methods/post_hartree_fock/rpa)
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RPMD
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Ring Polymer Molecular Dynamics [→ more](methods/sampling/path_integrals)
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SCCS
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Self-Consistent Continuum Solvation model [→ more](methods/qm_mm/implicit_solvation)
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SCF
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Self Consistent Field algorithm [→ more](methods/dft/index)
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SCPTB
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Self-Consistent-Polarization Tight-Binding
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SE
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Semi-Empirical methods [→ more](methods/semiempiricals/index)
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SIC
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Self Interaction Correction
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SOC
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Spin-Orbit Couplings
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STM
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Scanning Tunneling Microscope [→ more](methods/properties/stm_images)
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TDDFPT
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Time Dependent Density Field Perturbation Theory [→ more](methods/properties/optical/tddft)
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TMC
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Tree Monte Carlo algorithm
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TRS4
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TRace reSetting 4th order scheme [→ more](methods/dft/linear_scaling)
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UFF
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Universal Force Field
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UKS
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Unrestricted Kohn-Sham [→ more](methods/dft/index)
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VMD
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Visual Molecular Dynamics
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XAS
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X-ray Absorption Spectra [→ more](methods/properties/x-ray/index)
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XC
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eXchange and Correlation functional [→ more](methods/dft/index)
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xTB
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eXtended Tight Binding [→ more](methods/semiempiricals/xtb)
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Z-matrix
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formalism to represent atomic coordinates [→ more](https://en.wikipedia.org/wiki/Z-matrix_(chemistry))
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ZMP
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Zhao-Morrison-Parr potential
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```
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